« Back to Lactuca sativa search


Detailed information on CNT30354850


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727469Lactuca sativaCorchorus capsularis17.3445.3984.78138forward
CNT30379183Lactuca sativaManihot esculenta12.8135.9289.22102reverse complement
CNT30403856Lactuca sativaBeta vulgaris10.1826.385.1981forward
CNT30526114Lactuca sativaPhaseolus vulgaris8.4222.0488.0667forward
CNT30566738Lactuca sativaActinidia chinensis9.1720.3390.4173forward
CNT30588944Lactuca sativaMusa acuminata9.6723.3389.6177reverse complement
CNT3086893Lactuca sativaVigna radiata12.9433.8882.52103forward
CNT30172294Lactuca sativaTrifolium pratense13.4438.3584.11107forward
CNT30654098Lactuca sativaRosa chinensis10.6827.4289.4185forward
CNT30215606Lactuca sativaHelianthus annuus37.9499.0284.44302forward
CNT30154412Lactuca sativaPrunus persica13.8236.0786.36110forward
CNT30175046Lactuca sativaVigna angularis9.9225.984.8179forward
CNT30724469Lactuca sativaLupinus angustifolius7.662088.5261forward

Expression of CNT30354850

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLDSVRRQKKEKKTVFDRDKERMKMKIFRFASHIAWRRKFFRLFIHQMDFVYRRAW*

>peptide 2 (51 aa)
MDSHFFPFYFKNNILGFILFLKLRRFMLWLLHYHSYYYNNVTLILEEIMKS*

Sequence

>CNT30354850
CTTTGGCGGTGGTTGAATACTTGAATCAGAGAGAAAGGGAGCAACCGACATTGAATTGTGAAAAACAAAAGAGATAATTCAAGAAAATTTCTGCAACATC
TGGAGGGGTAACCGGTTAGTGAGTGTTAATTAGGATTAAGACACGGATTTTGTAGAGAAATCATGTTGGATTCGGTTCGTAGACAGAAAAAAGAGAAGAA
AACAGTATTTGACAGAGATAAAGAGAGAATGAAGATGAAAATATTTCGTTTCGCATCCCACATCGCTTGGAGGAGAAAGTTTTTCCGATTATTTATACAT
CAAATGGACTTCGTTTATCGCCGAGCTTGGTAACGCGAGCTTGTGACTCAAGTGAGGGCTCTAAAGTGGGATGGACTGAGATCGAGCCTTGTTTGGTTGG
GTCAAAGCTGTTGCAAAATCTGGTTTGCCCGTTCCAAGTTCGGAGTTGGATCAAGTGGCTTGAGCGAAGGCTTGGGCTTCTTGGTTCCTAGAGCAGAGGG
CAATGCGTTAGGCTGGCTTCACAGAGCTGCGATAACCTCTCGCTTCGAACAGTGGAAGGATAACAAATCGGTGCTCTCTTGGCTCAAATAATCAGCTTGG
CTCCTTCTAATGGACTCCCACTTTTTTCCTTTTTATTTTAAAAACAATATCTTGGGATTTATATTATTTCTTAAATTAAGACGATTTATGTTATGGCTTT
TACATTATCATAGTTATTATTACAATAACGTAACCCTCATATTAGAGGAGATTATGAAATCATGAGTAGAGCTTTAATAAATTTTTATAGGAACCG