Detailed information on CNT30354796


BLAST search results

BLAST vs Swiss-Prot:
sp|O23255|SAHH1_ARATH, E-value = 7e-102

BLAST vs NONCODE:
NONGMAT001730, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671211Lactuca sativaSetaria viridis21.6754.0382.46114forward
CNT30639595Lactuca sativaNymphaea colorata38.9743.4381.46205forward
CNT30221496Lactuca sativaHordeum vulgare16.3542.7986.0586forward
CNT30144739Lactuca sativaMedicago truncatula18.4420.9184.5497forward
CNT30437294Lactuca sativaAegilops tauschii18.4434.5282.4797forward
CNT30312478Lactuca sativaCamelina sativa35.5576.6483.42187forward
CNT30611972Lactuca sativaArabis alpina16.7336.9789.7788forward
CNT30570586Lactuca sativaVitis vinifera99.0575.5179.85521forward
CNT3026673Lactuca sativaPopulus trichocarpa78.1443.4980.29411forward
CNT30329937Lactuca sativaDioscorea rotundata50.9525.8784.33268forward
CNT30103950Lactuca sativaOryza rufipogon17.1126.3283.3390forward

Expression of CNT30354796

Peptides detected in this lncRNA

>peptide 1 (39 aa)
EKQSTIGLHLVQPLNTSGGFLRHTNQPILHFVVLLGVDC*

>peptide 2 (77 aa)
GKSRVPLACIWYNLLTPVVVSSDTPTNLSFILWYFLGSTARPSLMIDNTIWNSALSVEVGSGNLPVFSNSSSAFTPS*

Sequence

>CNT30354796
GGGAAAAGCAGAGTACCATTGGCTTGCATCTGGTACAACCTCTTAACACCAGTGGTGGTTTCCTCAGACACACCAACCAACCTATCCTTCATTTTGTGGT
ACTTCTTGGGGTCGACTGCTAGACCTTCCTTAATGATCGACAACACGATCTGGAACTCAGCGTTGTCGGTGGAAGTCGGATCGGGCAATTTGCCGGTCTT
CTCAAACTCCTCCTCAGCCTTCACTCCCTCGTGAATCAATAGAGTAGCGTCACCACCATCGTCAACGATCAAATCGGGACCACCGCCGGGACCCCAATCT
AGAGCACGCTCCGTGCACCACCAGTACTCCTGTAGAGTTTCCCCCTTCCAGGCGAACACGGCAGCGGAATCACGGGCGATGGCGGAGGCGGCATGGTCTT
GAGTTGAGAAAATGACACCGGTCTGGATTGTCATGTGGAGGGAGCCAGTGATTCTGGCACCCTTGAAAGGCTGAGAAGGACCGAATTCCGTCCTGCAAGA
CATGAGACCGGGCATTTCAACTTCGG