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Detailed information on CNT30354795


BLAST search results

BLAST vs Swiss-Prot:
sp|O23255|SAHH1_ARATH, E-value = 6e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30659902Lactuca sativaTriticum dicoccoides14.4939.6181.97122forward
CNT30681317Lactuca sativaTriticum urartu14.4924.981.97122forward
CNT30720265Lactuca sativaTriticum spelta10.8133.4683.5291forward
CNT30365573Lactuca sativaSorghum bicolor17.8142.4980.67150forward
CNT3021984Lactuca sativaPopulus trichocarpa52.8520.880.22445forward
CNT3065844Lactuca sativaSelaginella moellendorffii17.742.6983.22149forward

Expression of CNT30354795

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MNYDEHTLLLVTESLTLMAGKSRVPLACIWYNLLTPVVVSSDTPTNLSFILWYFLGSTARPSLMIDNTIWNSALSVEVGSGNLPVFSNSSSAFTPS*

>peptide 2 (45 aa)
MRPGISTSANSSSRRPKSAKDMSLTLYSRPVEVFSTVRAMVNEGL*

Sequence

>CNT30354795
CAGGTTTCAAGTTAGCATTGAATTCGGATCCATAAAAGTGCTAATGATTCATTCATAAGTGAACAATCGTTATCAGATCCGAATCACAATCACAGCATTA
TAACAGATCTAAAAACCTAAAACCCTATTAGTTTAGATCTAAGGGATGATCCACAAGCATTAGAACAAATAAGACGAGATCTATAGATGAATTACGATGA
ACATACCTTGCTCTTGGTGACAGAGTCATTGACATTAATGGCAGGGAAAAGCAGAGTACCATTGGCTTGCATCTGGTACAACCTCTTAACACCAGTGGTG
GTTTCCTCAGACACACCAACCAACCTATCCTTCATTTTGTGGTACTTCTTGGGGTCGACTGCTAGACCTTCCTTAATGATCGACAACACGATCTGGAACT
CAGCGTTGTCGGTGGAAGTCGGATCGGGCAATTTGCCGGTCTTCTCAAACTCCTCCTCAGCCTTCACTCCCTCGTGAATCAATAGAGTAGCGTCACCACC
ATCGTCAACGATCAAATCGGGACCACCGCCGGGACCCCAATCTAGAGCACGCTCCGTGCACCACCAGTACTCCTGTAGAGTTTCCCCCTTCCAGGCGAAC
ACGGCAGCGGAATCACGGGCGATGGCGGAGGCGGCATGGTCTTGAGCTGAGAAGGACCGAATTCCGTCCTGCAAGACATGAGACCGGGCATTTCAACTTC
GGCTAATTCGAGTTCCAGGCGGCCGAAGTCGGCCAAGGACATGTCCTTGACTTTGTACTCACGGCCGGTGGAGGTTTTCTCGACGGTGAGAGCCATGGTG
AATGAGGGTTTGTAGATCGGATCTTGGAGGCTCTCAGAGAAA