CANTATAdb - search

Detailed information on CNT30354707

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30528991	Lactuca sativa	Eucalyptus grandis	22.85	49.67	85.4	226	reverse complement
CNT30635771	Lactuca sativa	Capsicum annuum	12.94	35.56	96.88	128	forward
CNT30609506	Lactuca sativa	Gossypium raimondii	12.03	24.49	96.64	119	reverse complement
CNT30723094	Lactuca sativa	Triticum spelta	10.31	43.4	94.12	102	forward

Expression of CNT30354707

Peptides detected in this lncRNA

>peptide 1 (37 aa)
GHFCPPPFSRSRTWTLPLIQLPASKQLAFLYKEWKCG*

>peptide 2 (38 aa)
MMRSLLVELHTGKRKGSLYYFERRIVGLTDGLRGKYEI*

>peptide 3 (51 aa)
PFLSTALLTEPYVDVTAHTAPSQQAVSLPLQGMEVWVNRHQIEEFAFYFQQ*

>peptide 4 (69 aa)
MNLVIQDILILELMLSSREGVFIERGKSRVASRLTDFSESEEDLSFDHPEHEGAALDVRSAAKERRKGP*

Sequence

>CNT30354707
GGCCATTTCTGTCCACCGCCCTTCTCACGGAGCCGTACGTGGACGTTACCGCTCATACAGCTCCCAGCCAGCAAGCAGTTAGCCTTCCTCTACAAGGAAT
GGAAGTGTGGGTGAATCGACATCAAATAGAGGAATTCGCTTTTTATTTTCAGCAATAACATGATAAGAGCATCCCTTTCACAAAAACCTACAGACCCCCC
CTATCCGGCCACTTCAGCACCTTGTGATCTTTGATAAGATTATTACGAGCCCTCTCCTAGAATCTTTTTTTATTTCAAAAAAAAATAGCATGGTGGATCA
GGACAAGAATGAATCTGGTAATCCAGGACATACTCATCCTGGAGCTTATGCTCTCCTCTAGGGAGGGGGTTTTTATAGAGAGAGGTAAGTCGAGGGTAGC
CTCCCGCTTGACCGATTTCTCGGAGTCGGAGGAAGATCTCTCCTTCGATCATCCTGAACACGAAGGAGCTGCTCTCGATGTGAGATCAGCAGCAAAAGAA
AGAAGAAAAGGGCCATGATCCTATGTTCGTTTTCGCTCTGATCTGATGATGCGCTCCTTGCTCGTGGAGCTACATACCGGAAAAAGAAAAGGATCTCTCT
ATTACTTTGAGAGGAGAATTGTTGGTTTGACCGACGGACTACGTGGGAAATACGAGATCTAGGCAAGCCGCTACATGTTCTCCCCTTGCCCTTGAACGAT
AGATTAACTACTTATCTTCCCTTAGGTAGCGGTCGATCGGTTCGCATCTATGGTCAATCAATAGGTCCGCGGATCCATTCTTCTATACGATAAATCGCCA
TCTCGTAGCACCACCACGACACCGATTCCCCGACAAAACCCCCGATTTCCCGAGAGTGAGATAGCCGATAGTAGTAGACTAAGGCCGCTATTCCTGACAA
GGAATAGAGTAAGGCCTTTACCGATGTGCGCAGAGTATCGAAAGGAACCTCTCGGAGAAGTTCCGGGCCTTGACAGCCCTCCTTTCTTA