Detailed information on CNT30354620


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 5e-154

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30203004Lactuca sativaHelianthus annuus2639.8687.28456forward

Expression of CNT30354620

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MVSELSTSRVIVFPVRVFTKICICVYKQHHKNKITKILSASIIHVHKSYVWDNELVN*

>peptide 2 (44 aa)
MIGIKREINITNQFEHIKQQRGYKKHQKLESIKTIKPTKEESKN*

>peptide 3 (88 aa)
MQSRLLLNIIISKRTTILQLLPCKDQPLLIRWDSFLILNLRFHIINRVRALNLQCNGFSGQGFHKDLHTSTETEDEMEGGFLLDVVVS*

>peptide 4 (32 aa)
MIVSKKRFVDLIDLLIYESKRKLKHQKRYYKS*

>peptide 5 (30 aa)
MVFPVKVFTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30354620
CGACAATTAGTAACCACAATAATTTTGATCAATTTGTTTTTTTCTTTATTAAATGTGATTTCAAAGAAGCAAAGAGCCTAAAAGGCTAAAACCACAATCA
CATAAACCACAAATAAGTGTTCATACATCAACCAACATCATAAACATAAAAAGAAAAACCATCATCATCATCATCGTATCATCATCAACCCTAAAAACAC
CCACCACGAAGCCGGAGAACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCAGCAAGCGTACGACCATCCTCCAACTGCTTCCCTGCAAAGATCA
ACCGCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATCTTCGCTTTCACATTATCAATCGTGTCAGAGCTCTCAACCTCCAATGTAATGGTTTTTCC
GGTCAAGGTTTTCACAAAGATCTGCATACCTCCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAAGGTCCGGCCA
TCTTCAAGCTGTTTTCCGGCGAAGATAAGTCGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGTATTTTAGCTTTGACATTGTCGATTGTGTCGGAGC
TTTCCACTTCCAAGGTGATTGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCATGCCACCACGGAGGCGGAGGACGAGATGGAGGGTGGACTCTTTCTG
GATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATTTTT
GCCTTGACGTTGTCAATGGTATCTGAGCTCTCGACTTCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCATCTGTGTATATAAACAAC
ATCATAAGAACAAAATCACAAAAATCCTATCTGCAAGTATTATTCATGTACACAAATCCTATGTTTGGGATAACGAATTAGTTAATTAATAACCACGGTT
GTATAAAGTATATTTCACCGAGGAACTGATGATGCGATCGTCGAATCAGACTTAATTGGAATGAAGTAAGAAAAATTGAAAAACCGATCAACCAAAATTT
AATTTGAACATGATCGTTTCTAAAAAGCGATTTGTAGATCTAATAGATCTGCTGATTTACGAATCGAAACGTAAATTGAAACATCAGAAGCGTTACTATA
AATCATAAGCACTTCTAAAAGCAACAACAGATGAGCACCGATCGATCATAAGAACAAAACAGACTACAATTGATTGTAAACAAACTGGTACTATAACTCT
ATATGGATATAACAGATCTAAGAGAGTTGTTGATTGTAGAATCAATATGAGATATAAAAACAATACCTATGATTGGAATTAAACGTGAAATCAATATCAC
AAACCAATTCGAACACATAAAGCAACAAAGGGGATATAAAAAACATCAAAAACTCGAATCAATTAAAACAATTAAACCAACAAAAGAAGAATCAAAGAAC
TAACCTTGAGAGAATTGAAGAAGTGTGTCGAGAAAAAATCGATTCGAATTGCAATTGTGAGGAATAGGGGATGGATTTGGGGGTTGATTTATAGGGCAAT
GAAGGAGAGTATTCAACGAGAATAAAATGGAAGGCGGTGGGAGAGATCCAATGAGAATGTGACACGTGTATCGATGTAGACGCTATCTGTTGCCGCACGT
TAAGGCCAAGGTTCGGAACCTTGCGGAAAGAGTGGACCGCCTTTATGATATTTT