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Detailed information on CNT30354619


BLAST search results

BLAST vs Swiss-Prot:
sp|P05488|RT13_TOBAC, E-value = 1e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Lactuca sativaOryza sativa25.2715.2692.64421forward
CNT30501657Lactuca sativaCoffea canephora48.2616.3593.16804forward
CNT3098190Lactuca sativaSolanum tuberosum13.0942.0895.87218forward
CNT30187493Lactuca sativaSecale cereale25.6994.2791.59428forward
CNT30223773Lactuca sativaHordeum vulgare8.725.4485.52145forward
CNT30401101Lactuca sativaTriticum turgidum25.6935.1791.82428forward
CNT30592619Lactuca sativaMusa acuminata23.0516.6490.1384forward
CNT30437037Lactuca sativaAegilops tauschii16.2778.3296.68271forward
CNT30664530Lactuca sativaTriticum dicoccoides21.85101.6891.21364forward
CNT30598800Lactuca sativaFraxinus excelsior21.6196.7796.67360forward
CNT30228621Lactuca sativaAnanas comosus14.7759.1389.84246reverse complement
CNT30207841Lactuca sativaHelianthus annuus55.5834.5794.92926forward
CNT30687453Lactuca sativaTriticum urartu24.497.6393.87408forward
CNT30480890Lactuca sativaArabidopsis halleri19.9910094.29333forward
CNT30574571Lactuca sativaVitis vinifera33.078.9593.28551forward
CNT3056169Lactuca sativaAmborella trichopoda9.643.9690.62160forward
CNT30104330Lactuca sativaOryza rufipogon14.4128.0492.08240forward
CNT30115707Lactuca sativaOryza nivara24.499.3693.87408forward
CNT30557320Lactuca sativaPanicum hallii22.9386.0491.36382forward
CNT30335348Lactuca sativaCynara cardunculus21.7310098.34362forward

Expression of CNT30354619

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGRPILGILKKKEREQNHFLSVTYLIRLNRILRAVTIIHIHFSRQEGHGSYRF*

>peptide 2 (45 aa)
MTFSFPYMNRTSTSFVTPHRAYGSIPQPNLLWPRVLPFYSSVSGP*

>peptide 3 (37 aa)
MAFLGPIPSIFVEAILTCSSATDLAPEIYNILDPSFY*

Sequence

>CNT30354619
ATAGCNTGCAACTGATTCAGCTTCCGCTTCTGGGAGATCAAACGGAGCTCGATTAGTTTCTGCTAGACAAGAAATAAAGAACATAACCAATACAGGGAAC
AAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCAAATTACGGGGACCTACACATATTAGTACAGTAATAAGAATAAGACCAATAG
AGACTTCATAAGGGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGAGTGAAAGTTCCCAACAATCAATGACTTTT
TCATTTCCTTATATGAACCGTACGAGCACGTCCTTTGTCACCCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTGGCCCCGGGTCCTTC
CTTTCTATTCCTCGGTAAGCGGACCGTAGGAGCATGGGGGGGCGGTATCTGCTTTTGACTGATAGAATCTCTCTTTTGTCCCTCCTGACCGAACCCGCCA
AAAAACAAATAAATAGATAAAGTTTTGATTGCCGGGAGAGTTGCGTCGGAGACATCTTTATCTGAGGAGGAGGCTTCGTCGTCCGGCTCCTCATAAATGA
TGTTAGGATGGGCCGGCCCATCCTCGGAATCCTAAAAAAAAAAGAGAGGGAACAGAATCACTTTCTTTCAGTGACATATCTAATCAGACTGAATAGGATT
TTAAGAGCTGTCACGATCATTCACATCCATTTCAGTAGGCAGGAAGGGCACGGAAGCTACCGTTTCTAGAATGCGAGCAAGCTAGCTTGCTGACTCTCCT
AGTGGTTTGGCGGCAAGGAAAGGGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTCTAGAAGGCCGACCACTACATAGAGAGATCCATATACCA
GTCATGAGCGATAGCGAAGCCTAGAGAGGCGGAAGCAGTAGCTTCTAGGACGAAGCCGAGCCACTAGTGGAGTGGCCAAGGAGGCCTACTATACCGATAC
TGGATTAGTAACCGGTGAAATCCCCCAATCAAAATTGAAGTGAACTATTGAACAGTGTGATTGATCAGACAAGTACCAAGGCTTTCGGTAGACTTCTTTC
ATTTCCGAATTTGCTTGCGACAAGTCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGTGATCCATCTTGATGACGAATTCCACGATAACAAGAAAT
AGAAATTAATCGTTCGATGTCTGCTCGTTCTCCCCTCTTCAATTCCCAATGAACAACATGATCTTGACCTATCATTTGTTCAATTTGGTCGATCTGATAC
TTAGTTAATTCTTTTATCTTTATGTTCCCACTGATACCTAATCGATAACGAACCAGAATGGCTTTTTTAGGCCCAATTCCATCTATTTTTGTTGAGGCAA
TTCTGACTTGTTCATCGGCAACTGATCTAGCTCCTGAAATATATAACATTCTTGATCCTTCCTTTTACTAGTCTTCTCGGCTGGAATCAAAAAAGATTCT
CCGCTCTGCTCCTACTCCTTCTTCTCCTTTAGGATAGGATCGTCGTTGGTCCTTTTTTGCACTAAAAAACTAGTCAGAGCAACTAACTGTCTACGTACGA
AATTTACGGAACAGGGATAAGAAAGCAGGCGGGATAAAAGAAGAGCGAGGTATAGTGAGAAAGCTC