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Detailed information on CNT30354596


BLAST search results

BLAST vs Swiss-Prot:
sp|P35100|CLPC_PEA, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693027Lactuca sativaOryza sativa20.1824.8980.36224forward
CNT30631438Lactuca sativaVigna unguiculata2033.5380.63222forward
CNT30487971Lactuca sativaOlea europaea14.7731.5482.32164forward
CNT30122306Lactuca sativaPhyscomitrium patens8.8334.0382.6598forward
CNT30311914Lactuca sativaCamelina sativa22.0739.6480.41245forward
CNT3062430Lactuca sativaArabidopsis lyrata22.6121.7784.06251forward
CNT30207996Lactuca sativaHelianthus annuus15.0537.5383.23167forward
CNT30717839Lactuca sativaMalus domestica golden10.3622.6486.09115forward
CNT30625756Lactuca sativaDaucus carota9.3721.4483.65104forward
CNT3053264Lactuca sativaAmborella trichopoda19.133.8780.19212forward
CNT30150411Lactuca sativaBrachypodium distachyon12.8828.3281.12143forward
CNT30116632Lactuca sativaOryza nivara7.2120.898580forward
CNT30558331Lactuca sativaPanicum hallii16.1321.6280.45179forward

Expression of CNT30354596

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSTSVTIGPSSPASVSALLISLFLSTSADIWVLRSISLSRNSPACM*

>peptide 2 (58 aa)
MIKSVRIRRLRLCPLGCRSRKIRCAECRPLLQLGLPPLLRFLLCSSLCFYPRVLIFGS*

>peptide 3 (48 aa)
LRQSLRWWSRSGAAIKNRHITIGINIHNDRITFLDFPCQHLLGHAVFQ*

>peptide 4 (86 aa)
ASGKASGGGAAPVPPLRTVTLPSESTSTMTESPSLISRANIFSAMLSSSSLMIALLKAQFPSLLASRKLPSTLYPQFPSLRASLVA*

Sequence

>CNT30354596
GCCTCCGGCAAAGCCTCCGGTGGTGGAGCCGCTCCGGTGCCGCCATTAAGAACCGTCACATTACCATCGGAATCAACATCCACAATGACCGAATCACCTT
CCTTGATTTCCCGTGCCAACATCTTCTCGGCCATGCTGTCTTCCAGTAGCCTCATGATAGCTCTCCTTAAGGCTCAATTTCCTTCACTTTTAGCCTCTCG
AAAACTTCCTTCAACATTATATCCGCAATTTCCTTCACTTCGAGCTTCGTTAGTTGCCTGAAAACAATCATTTCGTCTAACCTGTTCAAAAACTCGGGTC
GGAAATACTGTTTTAGCTCCTCGGTGACCAAACTTTTGATTCTGTTGTAACTGCTATCCTTTTCATCATAGTCAAGGTCAAACCCGATTCTTCTCCCTCC
CTTTTCAATCACACTACTTCCGACATTTGAAGTCATGATCAAAAGCGTTCGGATTCGTCGGTTGAGACTTTGTCCACTGGGATGCCGGTCCAGGAAGATA
CGATGTGCTGAATGTCGACCTCTGTTACAATTGGGCCTTCCTCCCCTGCTTCGGTTTCTGCTTTGCTCATCTCTTTGTTTTTATCCACGAGTGCTGATAT
TTGGGTCTTGAGATCCATTTCTCTATCCCGCAACTCCCCGGCCTGTATGTAGAGTACAAGATTAGGTTTCCTTATATTATATAGCAACGTACTTTCCAAG
AAAGTTATTATAGCATTGTATTTTTAAATTATTTTTATTGAGGCGTGGTCTATCTAATTATAGCAATAGACAACCTGCTACCTTTTAAACTTTTTTAAAA
GGTTGCCCAAATGCTAAAATAGGTATAATTTTCCAAGGATAATGATCAAAGAAGAAATAATTGTAAGGTAGAAAGATGTAATAAGAAAAATAGAGCAATG
CTATGATATAAGATTGAAAAAATACATTACTATTCCTTGCATTTTATCCCATTATATTTTTGAACATGCATTTGTTAACTAAATATTTTGTTATACCTTG
CATCAAATTAAATGTTAAATTTGTTGTGTGATAAAAGGGTAACCGAGTATAATTATTTTTTAGTTTACAATTAGAAGAGTATGATGAAATAAAATTATTT
TAAATTAATA