CANTATAdb - search

Detailed information on CNT30354594

BLAST search results

BLAST vs Swiss-Prot:
sp|O65107|PSAN_MAIZE, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30727608	Lactuca sativa	Corchorus capsularis	12.75	21.65	83.33	84	forward
CNT30166677	Lactuca sativa	Pistacia vera	13.66	21.63	87.78	90	forward

Expression of CNT30354594

Peptides detected in this lncRNA

>peptide 1 (33 aa)
YRYSKRVKFFTHKYKQGLHKRLITISRTHWNHT*

>peptide 2 (34 aa)
MFQTELCMLLQSLHHLLPASFGSGTGEECSSQTK*

Sequence

>CNT30354594
TATAGATATAGCAAAAGAGTGAAGTTCTTCACACATAAATACAAACAAGGATTACATAAAAGACTCATCACCATTTCCAGAACACATTGGAACCACACTT
GAATTTGTCTTTCCCTTTGCACTCCAACTCTAGATCTTCCGATAGGAATGGCACTTTCTGCATTACGTATCAAGCAATCAAAACCATATATACCCAAGAT
CTTTATGTTAGATCTTGTGATTCATGCAAATTAAACTCTTAACAATCTACATCTATAACACTGTTAATCTGTTATGTTATTGAATTCGTTCTTAATTAAG
TAATTAGAGTTCAAACCTTTGTCTTTGCAAGATCTTGGCAGCCTGTGAAGTTGTAGGGGAAGGTGCATGTTCCAAACTGAACTGTGTATGCTCTTGCAAA
GTTTGCACCACTTGTTGCCAGCCTCTTTTGGAAGTGGCACTGGCGAAGAGTGCAGCTCCCAGACAAAGTAGAGCGGCTCTTCTTCCTTGCTGCGACTGAT
CAATGGAATCAGACGATGAACTCACAGTCTGCTTAGCCCTGATGACCGGCAACTTGTAACTGACGGCTGTAGGTGCGGCGGAGGAAGGCTTTGAGTTGAA
GTCCGGGGAAGCAAGACCACCGGAGACTGCGTAGTTACAGGCCAATACACTGGAGTTCA