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Detailed information on CNT30354577


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7J1C4|PSBL_ACOCL, E-value = 4e-19

BLAST vs NONCODE:
NONMEST001986, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30277508Lactuca sativaChenopodium quinoa25.4826.6294.69226forward
CNT30730639Lactuca sativaCorchorus capsularis7.6720.2494.1268reverse complement
CNT3060074Lactuca sativaArabidopsis lyrata26.9442.0890.38239forward
CNT30679284Lactuca sativaTriticum urartu21.260.6592.02188reverse complement
CNT30603960Lactuca sativaOryza punctata21.9815.4390.26195reverse complement

Expression of CNT30354577

Peptides detected in this lncRNA

>peptide 1 (78 aa)
IIEGNKYFWEGLFVFLVFDTRKGCEKSFSCVEIIMILDTVRQTFLVLVSIFYRRIRTFFYSYYVFYLFLSYNNYVYYK*

>peptide 2 (34 aa)
MNPIRNMNHKRKHLLNRSQEYQLQYLLSKEEFFQ*

Sequence

>CNT30354577
GGATAATTGAAGGGAACAAATATTTCTGGGAGGGGTTATTCGTCTTCCTAGTCTTCGACACAAGAAAGGGGTGTGAAAAATCCTTTTCTTGTGTCGAAAT
AATAATGATTCTTGATACTGTTCGTCAAACATTCCTAGTGTTAGTTTCTATTTTTTACAGACGTATCAGAACGTTTTTTTATAGTTATTACGTATTTTAT
TTATTCTTATCTTATAATAATTACGTATACTATAAATAAAAAGTGGTGGACAAACAAAAGAGGAGGGGAAAATCTGTTGAGTAAATAGAACTTCTTCAAT
GAACTTATAAAAAAAAATATTCTAATTATTAAGAACTCAACGGGACCTTCTCCCTCAAATCAGACAAACAAAGAAGGGAATCCGTTGAGTTCTTACGCTT
TCATGTCTACAACTCAATTCATCCGATTACTACAGGGATGAACCCAATCCGGAATATGAACCATAAAAGAAAACACCTACTAAACCGATCACAAGAATAC
CAGCTACAGTACCTATTATCCAAAGAGGAATTCTTCCAGTAGTATCGGCCATTTACCCCACTTCCCTCCACATTTCATCAAGTGGTCATGCTAGAGACAT
AAACAGTCATGGATAATTATGAGATGAGATCCTTCCGAATGGGGTAAGAGAAAGAATACCTAGAACGATTAGTCTATTATTTTAGTTCTCTCTCCTTTTC
TTAATTGAAGAAATAATTGGAAAATAAAACAGCAAGTACAAAAATGAGTAATAACCCCCAGTAGAGGCTGGTACGATTCAATTCAACATTTTGTTCGTTT
GGGTTTGATTGTGTCGTAGCTCTATAATTCGGATTAGGTTTATCGTTGTATAAATTGCATTGCTGATATTGACCCCAAAAAAGAAAC