Detailed information on CNT3035415


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QD36|NU1C_CUCSA, E-value = 2e-146

BLAST vs NONCODE:
NONMEST004538, E-value = 7e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671235Cucumis meloSetaria viridis18.5632.1285.48124forward
CNT30531354Cucumis meloEucalyptus grandis99.424.8989.91664forward
CNT30317759Cucumis meloCorylus avellana98.232.1791.16656forward
CNT30518402Cucumis meloJuglans regia36.3863.4593.42243forward
CNT30615574Cucumis meloSesamum indicum99.5544.6690.68665forward
CNT3020678Cucumis meloCitrullus lanatus17.9631.0998.33120forward
CNT30406240Cucumis meloBeta vulgaris36.9895.3792.71247forward
CNT30201817Cucumis meloPisum sativum82.7889.4888.61553forward
CNT30712407Cucumis meloGlycine max99.753.7186.34666forward
CNT30569544Cucumis meloActinidia chinensis99.117.9291.09662forward
CNT30237694Cucumis meloBrassica oleracea70.3642.9289.15470forward
CNT30262672Cucumis meloBrassica rapa57.195.3488.48382forward
CNT30608772Cucumis meloGossypium raimondii47.0110092.04314forward
CNT30215974Cucumis meloHelianthus annuus59.5854.3788.44398forward
CNT30689544Cucumis meloTriticum urartu41.774.4786.38279forward
CNT30596717Cucumis meloOryza meridionalis76.6555.0585.35512forward
CNT30360555Cucumis meloLactuca sativa98.6560.1889.68659forward
CNT30151942Cucumis meloPrunus persica99.428.2989.46664forward
CNT3057989Cucumis meloAmborella trichopoda61.8378.6788.86413forward
CNT30148081Cucumis meloBrachypodium distachyon97.7564.4685.15653forward
CNT30116024Cucumis meloOryza nivara64.8296.6585.91433forward
CNT30723989Cucumis meloLupinus angustifolius56.2926.9789.63376forward

Expression of CNT3035415

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTAMDGPILNKRVSPLDGSRFSLKSSFVPSAKA*

>peptide 2 (60 aa)
PSKEQLQITKKLIDLDRKQHKINQILYLNTQFDNPLLILLLLLVNQKVISRILLRKKLEK*

Sequence

>CNT3035415
ACCCAAGTAAAGAACAGTTACAAATAACGAAGAAACTAATAGATTTAGATAGGAAGCAACATAAAATAAACCAAATTTTATACCTGAATACTCAGTTTGA
TAACCCGCTACTAATTCTTCTTCTGCTTCTGGTAAATCAAAAGGTAATCTCTCGCATTCTGCTAAGGAAGAAATTAGAAAAATAACAAACCCTATAGGTT
GACGCCACAAATTCCAACCCCAAAAACCATATTTTGATTGAGCCTCAACTATATCAACGGTACTAGAACTGTTAGATAATTATAATATTGATAATACACA
TAGAGTTAATGGTATTTCATAACTAATTGATTGAGCAGCAGCTCGTAGACCACCTAAGAAGGAATATTTATTATTGGATCCATATCCTGACATAAGAAGT
CCGATGGGAGCAACACTTGAAATGGCAATCCATAAAAAAACACCGATAGGTAGATCGGCTAAAACAAGGCGATAACCAAAAGGAATTACTGAATAGCTTA
GTAAAATTGATATGACTGCTATGGATGGTCCCATACTGAATAAGCGAGTATCACCTCTAGATGGAAGCAGATTTTCTTTAAAAAGTAGTTTTGTACCATC
TGCTAAAGCTTGAAGAACTCCCAAAGGACCAGCATATTCAGGTCCAATCCGTTGTTGTATTCCTGCGG