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Detailed information on CNT30353938


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH7|ATPA_ORYNI, E-value = 1e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Eragrostis tefOryza sativa75.737.7897.5440forward
CNT30703171Eragrostis tefQuercus lobata68.333.3383.38397forward
CNT30271983Eragrostis tefChenopodium quinoa43.3721.5487.3252forward
CNT30201764Eragrostis tefPisum sativum41.4832.0986.72241forward
CNT30710758Eragrostis tefGlycine max34.2566.5686.93199forward
CNT3095993Eragrostis tefSolanum tuberosum62.999.1583.33366forward
CNT30301052Eragrostis tefTriticum aestivum98.4523.1393.36572forward
CNT30223113Eragrostis tefHordeum vulgare43.5581.6194.86253forward
CNT30541468Eragrostis tefBrassica napus68.3311.681.61397forward
CNT3018020Eragrostis tefZea mays75.7310.6997.73440forward
CNT30689283Eragrostis tefTriticum urartu80.5518.4593.59468forward
CNT30364459Eragrostis tefSorghum bicolor71.08100.9890.31413forward
CNT30371010Eragrostis tefOryza glumipatula75.7348.1495.45440forward
CNT30121210Eragrostis tefCitrus clementina71.7710.7183.69417forward

Expression of CNT30353938

Peptides detected in this lncRNA

>peptide 1 (42 aa)
GSYTERLEIIPGAGDSIKRDSEATISPLPSIGLARAFITRPK*

>peptide 2 (31 aa)
GVHIRNAWKLYPEQEIQLSEIPKRQFRLSHQ*

Sequence

>CNT30353938
GGGGTTCATATACGGAACGCCTGGAAATTATACCCGGAGCAGGAGATTCAATTAAGCGAGATTCCGAAGCGACAATTTCGCCTCTCCCATCAATAGGTTT
AGCGAGAGCATTTATAACACGACCCAAGTAAGCCTCGCTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCTTCTTGTATCATCAGC
CCATCGCCCATTAATACAATCCCAACATTTTTGGATTCCAAATTCAGAGCAATACCTCTAGTCCCTTCTGCAAATTCAACTAATTCACCTGACATTATTT
CACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGAACTACGCGACCGATATTCTCAATTCCTACTTTCCTATTATATTGTTCAATACGTTCGCG
GAGAATTTTATGAATTTCGTCGACTCGAAGGGTTGCCATTCTTGAATCTTTTTTTTTTTCGCAAGCAAGCAAGGTGAAAAATAATGCCTAAATTCTAAAC
GAAAGTAGAAGTTCAAGGCCTAATAAATTTTATTATCTTTTCCATTCTATGGCCCCGAGAATGCCAATATTAGCCGTAATA