Detailed information on CNT30353803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450104Eragrostis tefSaccharum spontaneum40.0822.7892.6395reverse complement
CNT3053086Eragrostis tefAmborella trichopoda33.7612.6286.2580reverse complement

Expression of CNT30353803

Peptides detected in this lncRNA

>peptide 1 (41 aa)
ASSPSSPISLPHTPPAASDPRQRSRRRTVSSPQIRGRPPRS*

>peptide 2 (30 aa)
MGKEKSHINIVVIGHVDSGKSTTTGHLIYKL

>peptide 3 (73 aa)
LHPPLPPYPSPTRRQPPQTRGSEVAGAPSRAPRSAADRREVNTSLQPWVRRRATSTLWSLAMSTPASRPPLAT*

>peptide 4 (49 aa)
SFIPLFPHIPPPHAASRLRPEAAKSPAHRLEPPDPRPTAEKLTLPFSHG*

Sequence

>CNT30353803
AGCTTCATCCCCCTCTTCCCCCATATCCCTCCCCCACACGCCGCCAGCCGCCTCAGACCCGAGGCAGCGAAGTCGCCGGCGCACCGTCTCGAGCCCCCAG
ATCCGCGGCCGACCGCCGAGAAGTTAACACTTCCCTTCAGCCATGGGTAAGGAGAAGAGCCACATCAACATTGTGGTCATTGGCCATGTCGACTCCGGCA
AGTCGACCACCACTGGCCACCTGATCTACAAGCTTGG