Detailed information on CNT30353508


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524453Eragrostis tefSetaria italica35.23892.78277forward
CNT30151052Eragrostis tefBrachypodium distachyon12.8343.5392.08101forward

Expression of CNT30353508

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAQIQAAQSYQRSERKGFLPPRDNLQAWHIHTLTFSR*

>peptide 2 (40 aa)
MAHSYSHILPVKSNRAAHLQHVALLGPELTGWASSRRRRR*

>peptide 3 (82 aa)
MSQAQIQAAQSYQRSERKGFLPPRDNLQAWHKFKQHSPIRDQNEKVFFPLVIIYKHGTFILSHSPGKIEQSSTFAACCIARP*

>peptide 4 (55 aa)
MLHCSALSLQAGRPLGGAGDDGEQVVPEWVAEVLGQAAVLDLLHLEQCRLVGVAG*

>peptide 5 (59 aa)
MTVSRLFPNGSLRCLARRPFLISFTLSSAAWSGSLARPNGSKGPPGCSLSSSSRPLMIR*

Sequence

>CNT30353508
AGTGAAATTACACATAATGTGCAGTACAATTTAACTATGCTAGTGTAGGGATGATAGGAAATGTTCCGACAAAACTTGGGGATAGAAGAGATTTCGGCTT
GTATAATTTAAGAAACAACAAGTAGTCATATACATTTGGCAGAAACAGCAACTGAAGTCCGCAGATTCCAATTACTTTACACCGTGAGAATTTCAAGAGC
TCATTTGGGCAACTTGATAACCATAAAGCACTTTCAGTAATATCATGTCTCAGGCACAAATTCAAGCAGCACAGTCCTATCAGAGATCAGAACGAAAAGG
TTTTCTTCCCCCTCGTGATAATTTACAAGCATGGCACAAATTCAAGCAGCACAGTCCTATCAGAGATCAGAACGAAAAGGTTTTCTTCCCCCTCGTGATA
ATTTACAAGCATGGCACATTCATACTCTCACATTCTCCCGGTAAAATCGAACAGAGCAGCACATTTGCAGCATGTTGCATTGCTCGGCCCTGAGCTTACA
GGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTCCCGAATGGGTCGCTGAGGTGCTTGGCCAGGCGGCCGTTCTTGATCTCCTT
CACCTTGAGCAGTGCCGCCTGGTCGGGGTCGCTGGCTAGGCCCAACGGGTCGAAGGGGCCGCCCGGGTGCAGCTTGTCCTCGAGCTCCAGGCCGTTGATG
ATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCCGCGACCACTGCCACCACCAGGTTGATGGGGATGCTATAGAGAGTACAC