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Detailed information on CNT30353507


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697405Eragrostis tefOryza sativa12.6835.6892.59162forward
CNT30677300Eragrostis tefSetaria viridis28.2539.0790.3361forward
CNT30524216Eragrostis tefSetaria italica27.0748.890.75346forward
CNT30184672Eragrostis tefSecale cereale8.1431.5293.27104forward
CNT30295002Eragrostis tefTriticum aestivum17.2142.6492.27220forward
CNT30390869Eragrostis tefTriticum turgidum10.0227.2394.53128forward
CNT30555388Eragrostis tefOryza glaberrima11.8229.9692.72151forward
CNT30438779Eragrostis tefAegilops tauschii12.2124.7291.67156forward
CNT30249379Eragrostis tefAvena sativa10.6434.2692.65136forward
CNT30662842Eragrostis tefTriticum dicoccoides12.2127.9192.31156forward
CNT30465769Eragrostis tefSaccharum spontaneum16.2836.1793.27208forward
CNT30137065Eragrostis tefLolium perenne16.3545.7392.82209forward
CNT30365046Eragrostis tefSorghum bicolor16.2821.694.23208forward
CNT30597113Eragrostis tefOryza meridionalis16.227.685.02207forward
CNT30103835Eragrostis tefOryza rufipogon16.243.2285.02207forward
CNT30578126Eragrostis tefOryza barthii16.224.5894.2207forward
CNT30498372Eragrostis tefDigitaria exilis16.9845.6893.55217forward
CNT30117889Eragrostis tefOryza nivara27.2361.5989.94348forward
CNT3039554Eragrostis tefMarchantia polymorpha7.9827.8792.16102forward

Expression of CNT30353507

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKKASMENMARRPFLISFTLSSAAWSGSLARPLMIR*

>peptide 2 (35 aa)
CAVQFNYASVGMIGNVPTKLGDRRDFGLYNLRNNK*

>peptide 3 (40 aa)
MFRTLNHTASGPQLAPNLLHASGMMAPAAPSMAHLAWISS*

>peptide 4 (78 aa)
MLHCSALSLQAGRPLGGAGDDGEQVVPEWVAEVLGQVLDGALAGDVGLDEEGKHGEHGQAAVLDLLHLEQCRLVGVAG*

>peptide 5 (47 aa)
MAHSYSHILPVKSNRAAHLQHRSERKGFLPPRDNLQAWHIHTLTFSR*

>peptide 6 (39 aa)
MSQAQIQAAQSYQRSERKGFLPPRDNLQAWHIHTLTFSR*

>peptide 7 (40 aa)
MAHSYSHILPVKSNRAAHLQHVALLGPELTGWASSRRRRR*

Sequence

>CNT30353507
TGTGCAGTACAATTTAACTATGCTAGTGTAGGGATGATAGGAAATGTTCCGACAAAACTTGGGGATAGAAGAGATTTCGGCTTGTATAATTTAAGAAACA
ACAAGTAGTCATATACATTTGGCAGAAACAGCAACTGAAGTCCGCAGATTCCAATTACTTTACACCGTGAGAATTTCAAGAGCTCATTTGGGCAACTTGA
TAACCATAAAGCACTTTCAGTAATATCATGTCTCAGGCACAAATTCAAGCAGCACAGTCCTATCAGAGATCAGAACGAAAAGGTTTTCTTCCCCCTCGTG
ATAATTTACAAGCATGGCACATTCATACTCTCACATTCTCCCGGTAAAATCGAACAGAGCAGCACATTTGCAGCATAGATCAGAACGAAAAGGTTTTCTT
CCCCCTCGTGATAATTTACAAGCATGGCACATTCATACTCTCACATTCTCCCGGTAAAATCGAACAGAGCAGCACATTTGCAGCATGTTGCATTGCTCGG
CCCTGAGCTTACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTCCCGAATGGGTCGCTGAGGTGCTTGGCCAGGTTCTCGA
CGGGGCCCTCGCCGGTGACGTAGGCCTGGATGAAGAAGGCAAGCATGGAGAACATGGCCAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCAGTGCCGC
CTGGTCGGGGTCGCTGGCTAGGCCGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCCGCGACCACTGCCACCACCAGGTTGATGGGG
ATGCTGTTGCCGAAGTAGCTCAGGGTGTTGCCGTCCAGGAGCAGGGCGCCGGTCTGAACACATAGTTAAAAGTGACACAAAATTCATGAGTTGAAACTTT
CAGACATTGCTACTACACTACTCCTTGTATCTGATCTGTGTAAACTTATTATGCACTAGTTTTACTTTGGTGCAATGACACGAGGTTCTCCTTGTATCCA
AATAAAAACTGCTACTGAAACCTGAAATTCTAAGAGCTGATGTTCAGGACCTTGAACCATACGGCCTCAGGACCGCAGTTGGCACCGAACTTGTTGCACG
CCTCAGGGATGATGGCGCCGGCGGCACCGAGCATGGCCCACCTGGCATGGATCAGCTCGTAGGCCTGGTACCTGCAGTGCGATAGTATTATAAGCTTTTG
CTGCATAGTTGAGGATGCAATCTCAGTTCTCAAGTTCAAGAATGGTCTTGCAGTGTAGGTTAGGTATTTGGGGAATAA