Detailed information on CNT30353506


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT302540Eragrostis tefZea mays18.8825.4693.3179forward
CNT30365562Eragrostis tefSorghum bicolor18.6746.3493.79177forward
CNT30581942Eragrostis tefEchinochloa crusgalli2755.0592.19256forward
CNT30498473Eragrostis tefDigitaria exilis24.6855.7184.62234forward

Expression of CNT30353506

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAQIQAAQSYQRSERKGFLPPRDNLQAWHIHTLTFSR*

>peptide 2 (79 aa)
MTVSRLFPNGSLRCLAQRVEGAARVQLVLELQAVDDPVVLGAADEDDLRDHCHHQVDGDAVAEVAQGVAVQEQGAGLNT*

>peptide 3 (82 aa)
MSQAQIQAAQSYQRSERKGFLPPRDNLQAWHKFKQHSPIRDQNEKVFFPLVIIYKHGTFILSHSPGKIEQSSTFAACCIARP*

>peptide 4 (53 aa)
MLHCSALSLQAGRPLGGAGDDGEQVVPEWVAEVLGPTGRRGRPGAACPRAPGR*

>peptide 5 (40 aa)
MAHSYSHILPVKSNRAAHLQHVALLGPELTGWASSRRRRR*

Sequence

>CNT30353506
TTGGGGATAGAAGAGATTTCGGCTTGTATAATTTAAGAAACAACAAGTAGTCATATACATTTGGCAGAAACAGCAACTGAAGTCCGCAGATTCCAATTAC
TTTACACCGTGAGAATTTCAAGAGCTCATTTGGGCAACTTGATAACCATAAAGCACTTTCAGTAATATCATGTCTCAGGCACAAATTCAAGCAGCACAGT
CCTATCAGAGATCAGAACGAAAAGGTTTTCTTCCCCCTCGTGATAATTTACAAGCATGGCACAAATTCAAGCAGCACAGTCCTATCAGAGATCAGAACGA
AAAGGTTTTCTTCCCCCTCGTGATAATTTACAAGCATGGCACATTCATACTCTCACATTCTCCCGGTAAAATCGAACAGAGCAGCACATTTGCAGCATGT
TGCATTGCTCGGCCCTGAGCTTACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTCCCGAATGGGTCGCTGAGGTGCTTGG
CCCAACGGGTCGAAGGGGCCGCCCGGGTGCAGCTTGTCCTCGAGCTCCAGGCCGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCCG
CGACCACTGCCACCACCAGGTTGATGGGGATGCTGTTGCCGAAGTAGCTCAGGGTGTTGCCGTCCAGGAGCAGGGCGCCGGTCTGAACACATAGTTAAAA
GTGACACAAAATTCATGAGTTGAAACTTTCAGACATTGCTACTACACTACTCCTTGTATCTGATCTGTGTAAACTTATTATGCACTAGTTTTACTTTGGT
GCAATGACACGAGGTTCTCCTTGTATCCAAATAAAAACTGCTACTGAAACCTGAAATTCTAAGAGCTGATGTTCAGGACCTTGAACCATACGGCCTCAGG
ACCGCAGTTGGCACCGAACTTGTTGCACGCCTCAGGGATGATGGCGCC