Detailed information on CNT30353462


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546820Eragrostis tefIpomoea triloba7.1646.8385.4296forward

Expression of CNT30353462

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQTMEFKIPIWLDSNLNYQVIKFCKNYTMY*

>peptide 2 (36 aa)
ASRNHRPIIGKQPTYIFFFPNDSKRKIPKRKLNWWN*

>peptide 3 (33 aa)
MAYNHYILPMWDIKLPLGKKRALGSLIDRITNK*

>peptide 4 (64 aa)
MYSSYGRRGKTTRIQHSVLNFGLAPLLSMVRGCPLGQASLLSWPTITIYFQCGTLSCHLVKRGH*

>peptide 5 (50 aa)
MEGGGKPQEFNTPFLTLDLHHCYQWSGAVHLDKHHCYHGLQSLYTSNVGH*

>peptide 6 (42 aa)
MGVMFQILRNNFGSKIVLTFSMTMPLFQTGLPFPLTLFNVTC*

>peptide 7 (37 aa)
MNLLSDEQTKSIRHHHWGGDAKAERHIVGDGESRAGG*

>peptide 8 (87 aa)
MLYSLYFMLSRVNPGMSKESANFSTSALRFSMSLLFTRPLLKSLRSLPYSFWMFRQIVTAWWRNSPICSKSFSTRPLEVIAGAPAKP*

>peptide 9 (32 aa)
GQAETTGLLLANNRLTFFFSQMIPNERFLKEN*

Sequence

>CNT30353462
GGGCAAGCAGAAACCACAGGCCTATTATTGGCAAACAACCGACTTACATTTTTTTTTTCCCAAATGATTCCAAACGAAAGATTCCTAAAAGAAAATTAAA
TTGGTGGAACTGAGGGAGGCAACCAAACCAGGGAGAGGCAGGAAGCGTTTATGAACCTATTATCTGACGAGCAGACAAAATCCATAAGGCATCATCATTG
GGGCGGCGACGCGAAGGCAGAGCGGCACATCGTAGGAGACGGGGAGAGCAGAGCGGGTGGATGATTAATACAGGAGGGCTCGCCGTGCTGTGATGCTCTA
CTCCTTGTACTTCATGCTCTCGAGGGTAAACCCAGGCATGTCGAAGGAATCAGCAAACTTCTCAACCTCGGCCCTGAGGTTCTCGATGTCCTTGTTGTTC
ACCAGGCCCTTGTTGAAGTCCTTGAGGAGCTTGCCGTACTCCTTCTGGATGTTCAGGCAGATAGTCACCGCCTGGTGGAGGAACTCACCGATCTGCTCAA
AGTCCTTCTCGACCAGACCCCTAGAAGTCATCGCAGGTGCACCTGCAAAACCATAGCCAGAACCCGTCAACCATTTGTTGCATCATTTCAGCAAGTTTTG
TAACAAAGAACAGTGAAATATATTGTTCCATCAAACGAAAGCGGTAAGGATATTCTTCGACTTAAAGGTTCAAGTTCAAATCTTTGGTCACATTTCTAAT
GCAGACCATGGAATTTAAGATACCAATATGGCTAGATTCTAATCTTAACTATCAGGTCATCAAATTTTGTAAGAACTACACAATGTATTAGTAGGAAAAT
GTGAAAGAGTAGCTAACTGAAATGGCACAATTATTAATCTACCTTCAGTTGCTAGGTGATCTAGTTGTGCTTTGGAAGCATGTATAGTTCATATGGAAGG
AGGGGGAAAACCACAAGAATTCAACACTCCGTTCTTAACTTTGGACTTGCACCATTGTTATCAATGGTCAGGGGCTGTCCACTTGGACAAGCATCATTGT
TATCATGGCCTACAATCACTATATACTTCCAATGTGGGACATTAAGTTGCCACTTGGTAAAAAGAGGGCATTAGGATCACTTATTGATCGCATTACAAAC
AAATGACTGAAATACTGAAAGTCTAATATTTTTCAGAAGTCATTTTGTTGATGAAAAGACAAGAATCATCAAGAGGCGCTGTTTAAAAATGGGAGTTATG
TTTCAAATCCTTAGAAACAACTTTGGTTCCAAAATAGTCCTAACATTTTCTATGACAATGCCCCTCTTCCAAACAGGCCTGCCTTTTCCACTAACCTTGT
TCAATGTGACTTGTTAATAACATCACAGTAATAAATTATTG