Detailed information on CNT30353440


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690727Eragrostis tefOryza sativa27.3550.8582.96358reverse complement
CNT30455311Eragrostis tefSaccharum spontaneum22.7726.6183.22298forward
CNT30595519Eragrostis tefOryza meridionalis8.3353.4385.32109reverse complement
CNT30369233Eragrostis tefOryza glumipatula8.3335.7485.32109reverse complement
CNT3099654Eragrostis tefOryza rufipogon8.3325.5984.4109reverse complement
CNT30574824Eragrostis tefOryza barthii8.3352.1585.32109reverse complement
CNT30497582Eragrostis tefDigitaria exilis8.3352.1588.07109reverse complement
CNT30603436Eragrostis tefOryza punctata7.136.7683.8793reverse complement
CNT30550503Eragrostis tefOryza brachyantha8.3323.4985.32109reverse complement

Expression of CNT30353440

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VFFHLLFCFTQIVFPQHVIHPQSKSMQSCSIKLEW*

>peptide 2 (41 aa)
MVKVLSCLHQVLLCMTAVTTDCATRIVLLCQLVGALARMSS*

>peptide 3 (49 aa)
MWSCSRTELLATSIFSTSGRAAFVLEHSRRFANMGLLSSNWNSGSDEQR*

>peptide 4 (32 aa)
MSLFPGKKSWTPLIKVGNLTQSLKALLELMVH*

>peptide 5 (34 aa)
MNRDDSVWAYGRIWERLAAEQKNRQQLVEQDVEF*

>peptide 6 (91 aa)
MKKRPRGQIFLGCDNEPLSRQEIMDSVNKSGKFDTKFEGFTGTDGPLGKRMENSKTRAEIGWEPKYSSFREFLGVSSQHPCTLSGSPDSTE*

Sequence

>CNT30353440
GTCTTCTTTCATCTGTTATTCTGTTTTACCCAAATTGTATTTCCTCAACATGTGATACATCCTCAATCTAAATCCATGCAGAGTTGCAGCATCAAATTGG
AATGGTGAAGGTTCTTTCCTGTTTACATCAAGTACTGCTCTGTATGACTGCAGTGACAACGGACTGTGCAACGAGGATTGTCCTTCTGTGCCAATTGGTA
GGAGCCCTCGCACGGATGTCCTCCTAAATGTGGAAAATATTGTTCTTGATGCAGGAGGTTGTGTTCTCAGGCTAGCGGGACTTTATATATCCTCAATCAT
GAATATTTCTTATTTTGTTATGCCACAATGTAAACTTTAAACGTTAAGAATTGTATATATTAGTATGCATTACTAGTATAATGTTTCATTAACTTGGACA
CACAAGATAGACAGAGGTGCCCATACTTTTTGGCTGAGGAAAGGGACTCTTGACTCAAGACCAGATCATATTGTCAATCAGATTAATTATGAAGATGCTG
CTTCCCTTGCAATTGCAATAATGAAAAAAAGACCTCGAGGTCAAATATTTCTGGGCTGTGACAATGAGCCTCTTTCCAGGCAAGAAATCATGGACTCCGT
TAATAAAAGTGGGAAATTTGACACAAAGTTTGAAGGCTTTACTGGAACTGATGGTCCACTAGGGAAAAGGATGGAGAACTCGAAAACCCGGGCTGAGATT
GGGTGGGAGCCCAAGTACTCGAGCTTCAGAGAATTTCTCGGTGTCAGCAGTCAGCATCCCTGCACTTTATCCGGCTCTCCTGACTCAACTGAATAAAGCG
TGAGGAGCTTATAGTGATGCTTCAATTTTGATATGTATGAGCTGATAATATGCTGAATCTCTTGGCAATTCGGCGTACTAGGCAACTAGAGTAAGAGACG
CGTATCGTGCCTGCTCTGTGGTTGTCCTCAGCTTAGAATCGAGTCTCAGGTTACTGATTTATGTGGTCATGTAGCAGAACTGAATTGCTTGCTACAAGTA
TATTTTCAACCTCTGGTCGGGCAGCTTTTGTTTTGGAACATTCAAGAAGATTTGCCAACATGGGGCTGCTATCGTCCAACTGGAACTCGGGGTCAGATGA
ACAGAGATGACTCTGTCTGGGCATACGGACGCATCTGGGAGCGTTTGGCCGCAGAACAAAAGAACCGTCAACAACTCGTAGAACAGGATGTTGAGTTCTG
ATTATTCGTCTAGCACCGAGGCCAAAACCATCCTTCCGATCTTTGGGTGGAATTCTAATGTTGCACACTGAAAATGACATCTCAACAACCAAGCAAACAG
AAAAAAAGG