Detailed information on CNT30353380


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673517Eragrostis tefSetaria viridis23.6155.9789.71136forward
CNT30555389Eragrostis tefOryza glaberrima74.4861.6479.72429forward
CNT30138306Eragrostis tefLolium perenne54.8650.881.33316forward
CNT3012274Eragrostis tefZea mays59.7247.2588.37344forward
CNT30367618Eragrostis tefSorghum bicolor75.8761.5586.27437forward
CNT30597090Eragrostis tefOryza meridionalis21.5327.1386.29124forward
CNT30116475Eragrostis tefOryza nivara21.0121.7286.78121forward
CNT30551969Eragrostis tefOryza brachyantha71.8846.5779.23414forward

Expression of CNT30353380

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MQGISHRQNLRQSLTSDGMRMQHHLRRHWDLVPSFHMSLWLYHLLHFLA

>peptide 2 (34 aa)
MLASFNWLTTRGWFWLSLACSLESALTEGVLSLI*

Sequence

>CNT30353380
CCTGGCATCAGAAACACTGGATGATATTGATCCGAGAGATGTCTCCTTCTTGGCTTCACGCTTCATGAGGCTTTGATAGAACTCCACGATCTCCGGTGCA
CGGTGTACCTTGTCACCACCAGCAAGGCTTCTGGATAGAGCACCTGGAGGTGGTCTTGGGACTCTTGTAGCTCTCTTCTCAATGTTGGCAAGTTTTAACT
GGCTCACCACCAGGGGGTGGTTCTGGTTGTCACTAGCTTGTTCACTGGAGTCAGCATTGACTGAAGGGGTCCTCTCTTTAATCTGAGCAAGTTTTGGAGG
GAGTGCACCTTTTGGACAGGAAACAAAAGCTGTACTGTGACCACCACCAAACCTCTGTGCTCTTGCTTGCCCAGCCTTCTCTTTTATTGCCTTCTCCCTT
TCAGTTGCAAGCTTGTGCCTATCTTTGTATGCAGGGTATTTCTCATCGGCAAAACCTTCGACAGTCTTTGACATCAGATGGAATGAGGATGCAACATCAT
CTAAGACGTCACTGGGATCTTGTTCCCTCTTTCCATATGTCGTTATGGCTATACCATCTCCTGCATTTTTTAGCAT