CANTATAdb - search

Detailed information on CNT3035318

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30147536	Cucumis melo	Medicago truncatula	32.51	22.34	89.18	527	reverse complement
CNT30438074	Cucumis melo	Aegilops tauschii	32.57	22.67	85.42	528	forward
CNT30655398	Cucumis melo	Rosa chinensis	32.45	23.64	87.26	526	forward
CNT30622536	Cucumis melo	Cajanus cajan	32.51	31.82	91.84	527	reverse complement
CNT30596810	Cucumis melo	Oryza meridionalis	29.61	25.25	85.21	480	forward
CNT30725731	Cucumis melo	Lupinus angustifolius	32.57	35.27	91.67	528	reverse complement

Expression of CNT3035318

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SLTSRFWRRSRFSKRKPLFISNSLSLQTRIEF*

>peptide 2 (33 aa)
MKTRVYLMSLSFSVQRNELKYSILFIHIQFSIS*

>peptide 3 (30 aa)
MKTPCFIPLLHFEHENEGLSYVSFILSSKE*

>peptide 4 (34 aa)
MISTFNCAPETGSKHAQCASFTTCSGPGCLPVVF*

Sequence

>CNT3035318
TGAGTCTGACTAGTAGGTTCTGGAGGCGTAGTAGGTTTAGTAAAAGAAAGCCTTTGTTCATCTCAAATTCTTTGAGCCTTCAAACACGAATTGAATTTTG
ATGCTTCCTTTCCTTCCTCTCAAATTCTTTGAGCCTCTTCCTAGGCTTGATTTATGGATGTGAATTTCTTTCTCGTCTTATTTGAGTCTGATTCCTTGAA
TTATTTTAGGTTCATTCTCAGGATAGGTTTTTTTTCATGAAAATGTACGATTTATCTTATTCGAAATATGAGACATAAGATCTTTCCCTCAGTAAATTAC
TGTCCAAATCAAGGGAAAAGAGGTTCTCCCCCCCTGTCTTTTTGATGAAAACCCCATGCTTCATTCCCTTGCTTCATTTTGAGCATGAAAACGAGGGTCT
ATCTTATGTCTCTTTCATTCTCAGTTCAAAGGAATGAGCTCAAATATTCAATATTATTCATTCATATTCAATTCAGTATAAGCTGAAGACACATAAGGGC
CCTAACCATATTTCGGCTCGTGATCAATCCATATCTACCGATAGCAAAGAAATAGGCACTGAGAATCAGTACATCTTCTCGCTGACCAACTCCTTATCAA
TTCCGATTCATTGAAATATGAAGAAAATGGATGAAATGAAATTTGGGGGTCGATTTAGGTAGGCTCCTTCCCCTCCACTGCATAGGAGCGCTAGCAGGTA
CTACGAGCCCTCTGTCCCACGCATCTAACCCGCTCGCGTGGTTCACCGGTTCCACCGAAAACTCTCATTTGTTGAAGGGGAGCATAGTGCGCTTTAGGCA
CCGAGCGAGAAAGGTCTCTTCTTTCGTTTCGGTTTATTCACTGATCTGAAACTGAGCACTTCTTTTCTTATTGATTCCAGGGGCTAGGCCTTCTTTCATT
CAGTCGAGACGAACCGAATTAGCACTTCTCAGATCAGGCTAGGCCTCTCCTGCTCGGGCTTAGGGGCCCTGGATGCGCTAGCGATCAGCACATAGGGGGG
TGCTTGCCCGGGTTTCTCGGCCTGGTATCCTGCACCTCGCGTTCATGATATCTACATTCAACTGTGCCCCGGAGACAGGGTCGAAGCACGCCCAGTGTGC
TTCTTTCACGACATGCTCTGGTCCCGGGTGTCTTCCAGTGGTCTTCTAGCCTTAGAAGAAGTCGTGTCCGTCCAGAAAGCCTAAAGATGAAATAAAAGGA
AGACGTAGAAGGTAAAGGAGGGAGCGGACTACGGAGGCCTTTTAGTGGAATCTTTTCCGAAAAAAGAGGTCCGACCTGTCCTAAAAAGGTCCAGATGAGG
GCTCGACTGAAAGGAGAGAAGCGACTGAAAGTTCGCCTTTTAATAGGTCCGAAGGTTATGAAATAACTCGACTCAAAACAATAGGGTGCGAAGGTACTCG
TAGTTTTAGATATAGGGAAGGCGCAAAGAATTTGTGGAGTTGAACTCGAGTGAGGTTAGGAAGGCTCCGTAGGAGATTGATTCTTTGCTCCTTCAAAGGA
GTGCAACTAATTTCATGGCCTTTGTTCCTCTCCTTTCAGTCGAGCCTCTATCTGAATTTTTGGACCTTTGTTTTTGGACAGATTAATATTGATAGAAACA
AGTCCTCCTAACACGTCCGAA