Detailed information on CNT30352984


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697771Eragrostis tefOryza sativa11.2820.5690.9166forward
CNT30677121Eragrostis tefSetaria viridis15.0422.1792.0588forward
CNT30295231Eragrostis tefTriticum aestivum32.313686.24189forward
CNT30392448Eragrostis tefTriticum turgidum23.7626.7387.77139forward
CNT30439146Eragrostis tefAegilops tauschii30.7741.3886.11180forward
CNT30257614Eragrostis tefAvena sativa30.9441.3284.53181forward
CNT30662351Eragrostis tefTriticum dicoccoides32.3135.5986.77189forward
CNT30136185Eragrostis tefLolium perenne30.9427.4787.29181forward
CNT30118046Eragrostis tefOryza nivara14.721.9986.0586forward

Expression of CNT30352984

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMASDQDPSGAYPFHPLEAYPFHPWEVEDRPYQA*

>peptide 2 (35 aa)
MPLEPQVLLPLKLKCSNHLTYLKVNSIASHWRHPK*

Sequence

>CNT30352984
GCACTCATCATTGAAAGAAATAATCCGTGGAACCAATCGTTAAGACTCTTAGGGTGTAAAGAGGCAAATTAACATATATTGTTCGTGACTGTCAACATTG
AAGCGAAGTGTACAAGCAAAACGTCTACAAATATTTATCACACTATACAAATGGTACCAGCTTTCCACAGCCCACGCTGAACCTAACCATCCTGATCCTA
TCCGATCATAATATATAGAACAAGTAACAAACTCGGCTGGAGATTTTTACTCGCCAAAATTGTCCTGGTACCAAAAAGAATATCAATTTGGAACAACAAA
TCATCTACAACTCCAAAGATGCCTCTGGAACCTCAGGTTTTACTTCCGCTTAAACTGAAATGTTCAAATCATCTAACATATCTTAAAGTCAACTCAATAG
CTTCCCATTGGAGGCATCCCAAATGATGGCATCGGACCAGGACCCATCGGGGGCATACCCATTCCACCCATTGGAGGCATACCCATTCCACCCATGGGAG
GTGGAGGACCGCCCATACCAGGCATAGGTGGAGCGGGCAAGGCGAGAGGAAGCAATTGAGCATACATGTTCTGCACAACAGAAAA