CANTATAdb - search

Detailed information on CNT30352978

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30604548	Eragrostis tef	Oryza punctata	3.83	21.29	90.57	53	forward

Expression of CNT30352978

Peptides detected in this lncRNA

>peptide 1 (39 aa)
VSSGRVEWEGKGESATAMTEAVWARETTQERQDAMLFRS*

>peptide 2 (56 aa)
MRCCSAVDLICSPAWMRRARRRALRPARQASDSTEESTGAGRQLISAQLILSFLLL*

Sequence

>CNT30352978
GTTTCTTCTGGTCGCGTTGAGTGGGAGGGGAAAGGCGAGTCGGCGACGGCGATGACGGAGGCGGTGTGGGCGAGGGAGACAACGCAGGAGAGGCAGGATG
CGATGCTGTTCCGCAGTTGATTTGATCTGTTCCCCGGCGTGGATGCGGCGAGCGCGGCGACGAGCGTTGCGTCCAGCGAGACAAGCAAGCGATTCGACCG
AGGAGTCGACTGGTGCAGGTAGGCAGTTGATTTCGGCGCAGTTGATTTTGTCTTTTTTACTGCTGTGATTGGTGCTTGTTGTGGGTACCTTGATTGATTC
TCGTGTTGCTTTTTGTTATGTTTGATTTTGACATGCCTTGCTGTTGTTAGTTGGGAGGCGACTTGCTTGATAGGAACGACTTGCTCCTTCTTGTCATTAC
CATTTGTTCTGCACATATTCGTCATAGATTAATTGTAACACCCTAGCCTGTTTATAGGCTAGTAGTTGTGATTTCAGGCCAAGAGGGCTAGAATTGGTGT
GGTTATGGGAATAGTCCCATATTGGTTGGTTGTTTAGGTGGCTGATGGTGAGCATATAACTCTTGTTGGTTCCAAGCATAGCACCTCCGGGTTAACTGTT
TTACACGAAGCGAGGCGAGGACGAAAGCGTAAGAGGGATGCTATGTGCAGTATGCCGTGTGCTGCGGGGCGTCAGCCATTAAGGGAGTGACTGTAACACC
CCAGCCCATTTGTAACCTAGTAGTTGTGGTTTCGGCCCAAAAGGGGCAGAAGTGGTGTGGTTGTGGGAGTCCCACGTTGGTTGTTTAGGTAGGTGAGGGT
CAGCATATAACTCTTGTTGGTTCTAAGCATAGCACCTTCAGGTTAACCCTTTTACACAAAGCGAGGACGAAAGGGTAAGAGGAGTGCTATGTGCATGCGC
GTGCTTACCCCACGTGAGGGCTGTGCGGTAAGCGGTTTTGAAAGCAGGGTGTTACATTAATACCACTGGAGTAGTGGGATTGTTTGCAAATTTCCAGACA
TTGCTATCTGACAAGCAGCCAAGCTTGTACCATTGACGGTTTGTGCTTGGTGTCACATTCTGTATGCCGATGGAAATGGTGAAAAATTAGAGCGGCATCA
TCATCATGATTATTGCATTGCTACCTCAATTGTGGTACATGTGAATAAAGCTTGTAGATCCGACCAGCAATGTAATTCGTTGAAGTGAAGAGAGCTTCTA
GAAGCGATTGTTGTTGCGCTAGCACTGACTTCTATTAGATGCACTAGGTTTTTCTTGTGGTACTATTACTCCTAGTTAACTTTGCTCCAGTAGTTATAAT
GAGATGTTGTTAAATTGTCTTGGTACTATAAAGTTGTAATATGTGTCACTTGGCTTACCATTATTTGTTTTCATTTTCATTGGCA