Detailed information on CNT30352811


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43193|NLTP1_SORBI, E-value = 8e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523932Eragrostis tefSetaria italica12.7327.1487.3795forward
CNT30470737Eragrostis tefSaccharum spontaneum25.7449.3685.42192forward
CNT30371391Eragrostis tefOryza glumipatula13.424.2190100forward
CNT30104631Eragrostis tefOryza rufipogon25.654.8984.82191forward
CNT30578426Eragrostis tefOryza barthii13.427.8690100forward
CNT30118027Eragrostis tefOryza nivara13.427.0390100forward

Expression of CNT30352811

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAELTWPQVMAAFASSDISSAAATTTRATSTSFF*

>peptide 2 (55 aa)
MHAGAQLTLEQSMDALMVYGNLTPHLLGMLAALPALRPLTPLQQPADGAPPEPRA*

>peptide 3 (62 aa)
MVQQTRSSPQKQENTGRPGTHKHDTTRLQGGAAGTKTSEGTLAYTHTTKSIVEHTYDGEILF*

>peptide 4 (89 aa)
MVCMESWRRLSIYACRCSADPGAVDGCADGVWQSDAALAGDAGGVAGVEAPDAVAAAGRRGAAGAAGVGEALRDGRAHLAAGDGRVRLI*

>peptide 5 (65 aa)
QFQLGGETCMWSIPKGDIYVKSINSGSGHGTTNSIISSKARKYRPAGNTQARYNKAAGRCSRHKN*

>peptide 6 (79 aa)
AISVGRRNMHVEHTKRRYICEIHKQWQWTWYNKLDHLLKSKKIPAGREHTSTIQQGCREVQQAQKLARALSRTRTLPRV*

Sequence

>CNT30352811
GCAATTTCAGTTGGGCGGAGAAACATGCATGTGGAGCATACCAAAAGGAGATATATATGTGAAATCCATAAACAGTGGCAGTGGACATGGTACAACAAAC
TCGATCATCTCCTCAAAAGCAAGAAAATACCGGCCGGCCGGGAACACACAAGCACGATACAACAAGGCTGCAGGGAGGTGCAGCAGGCACAAAAACTAGC
GAGGGCACTCTCGCGTACACGCACACTACCAAGAGTATAGTAGAGCACACGTACGACGGAGAGATCTTATTCTGACGACTCATAAGCAACACGTAGGAGT
ATGTATGGTATGTATGGAGTCATGGAGACGACTGAGCATATATGCATGCAGGTGCTCAGCTGACCCTGGAGCAGTCGATGGATGCGCTGATGGTGTATGG
CAATCTGACGCCGCACTTGCTGGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCCCCTGACGCCGTTGCAGCAGCCGGCCGACGGGGCGCCGCCGGAGCCG
CGGGCGTAGGGGAGGCACTGCGAGATGGCAGAGCTCACCTGGCCGCAGGTGATGGCCGCGTTCGCCTCATCTGACATCAGCAGCGCCGCCGCAACAACGA
CAAGGGCAACCAGCACCAGCTTCTTCTGAGCGCGAGCCATCGTCTCTTCGATCACTTGGGAGTTGGGACACTAGCGTAGCAGCAAGAGCTAGCTTTGTTA
ACAATGGCTGGCTGAGAGATGGAGGAGCAAGTGCTCGTGTGGAGAA