Detailed information on CNT30352810


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43193|NLTP1_SORBI, E-value = 8e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677036Eragrostis tefSetaria viridis12.2738.588.5187forward
CNT30524109Eragrostis tefSetaria italica13.5421.4388.5496forward

Expression of CNT30352810

Peptides detected in this lncRNA

>peptide 1 (60 aa)
GETCMWSIPKGDIYVKSINSGSGHGTTNSIISSKARKYRPAGNTQARYNKAAGRCSRHKN*

>peptide 2 (52 aa)
MHAGAQLTLEQSMDALMVYGNLTPHLLGMLAALPALRQLQQPADGAPPEPRA*

>peptide 3 (34 aa)
MAELTWPQVMAAFASSDISSAAATTTRATSTSFF*

>peptide 4 (74 aa)
RRNMHVEHTKRRYICEIHKQWQWTWYNKLDHLLKSKKIPAGREHTSTIQQGCREVQQAQKLARALSRTRTLPRV*

>peptide 5 (62 aa)
MVQQTRSSPQKQENTGRPGTHKHDTTRLQGGAAGTKTSEGTLAYTHTTKSIVEHTYDGEILF*

>peptide 6 (86 aa)
MVCMESWRRLSIYACRCSADPGAVDGCADGVWQSDAALAGDAGGVAGVEAVAAAGRRGAAGAAGVGEALRDGRAHLAAGDGRVRLI*

Sequence

>CNT30352810
CGGAGAAACATGCATGTGGAGCATACCAAAAGGAGATATATATGTGAAATCCATAAACAGTGGCAGTGGACATGGTACAACAAACTCGATCATCTCCTCA
AAAGCAAGAAAATACCGGCCGGCCGGGAACACACAAGCACGATACAACAAGGCTGCAGGGAGGTGCAGCAGGCACAAAAACTAGCGAGGGCACTCTCGCG
TACACGCACACTACCAAGAGTATAGTAGAGCACACGTACGACGGAGAGATCTTATTCTGACGACTCATAAGCAACACGTAGGAGTATGTATGGTATGTAT
GGAGTCATGGAGACGACTGAGCATATATGCATGCAGGTGCTCAGCTGACCCTGGAGCAGTCGATGGATGCGCTGATGGTGTATGGCAATCTGACGCCGCA
CTTGCTGGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCAGTTGCAGCAGCCGGCCGACGGGGCGCCGCCGGAGCCGCGGGCGTAGGGGAGGCACTGCGAG
ATGGCAGAGCTCACCTGGCCGCAGGTGATGGCCGCGTTCGCCTCATCTGACATCAGCAGCGCCGCCGCAACAACGACAAGGGCAACCAGCACCAGCTTCT
TCTGAGCGCGAGCCATCGTCTCTTCGATCACTTGGGAGTTGGGACACTAGCGTAGCAGCAAGAGCTAGCTTTGTTAACAATGGCTGGCTGAGAGATGGAG
GAGCAAGTG