Detailed information on CNT30352809


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43766|NLTP3_HORVU, E-value = 4e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677319Eragrostis tefSetaria viridis27.3643.5994.12119forward
CNT30523964Eragrostis tefSetaria italica34.7147.4892.05151forward
CNT30440524Eragrostis tefAegilops tauschii20.4611.6687.6489forward
CNT30597201Eragrostis tefOryza meridionalis35.1760.7183.01153forward
CNT30104115Eragrostis tefOryza rufipogon35.6351.583.23155forward

Expression of CNT30352809

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLLRLRTPLQQPEVMAAFASSDISSAAATTTRATSTSFF*

>peptide 2 (38 aa)
MLMGNGTETPHLPGMPATVPMLILPTLPARLLRHRHAA*

Sequence

>CNT30352809
GCGCGAGTGAACAGTAGATAGGCACGAAAGAAGGTTACGTACTTGTTGCAGTCAGTGGACATGCTGATGGGGAATGGCACGGAGACGCCGCACTTGCCGG
GGATGCCGGCGACGGTGCCCATGTTGATCCTGCCGACGCTGCCGGCGAGGCTCTTGAGGCACCGGCACGCCGCCTGACGGTCGGCGGTGGTGCGCGCCAT
GCTGTTGAGGCTGCGGACGCCGCTGCAGCAGCCGGAGGTGATGGCCGCGTTCGCCTCATCTGACATCAGCAGCGCCGCCGCAACAACGACAAGGGCAACC
AGCACCAGCTTCTTCTGAGCGCGAGCCATCGTCTCTTCGATCACTTGGGAGTTGGGACACTAGCGTAGCAGCAAGAGCTAGCTTTGTTAACAATGGCTGG
CTGAGAGATGGAGGAGCAAGTGCTCGTGTGGAGAA