Detailed information on CNT30352524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001310, E-value = 8e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730610Eragrostis tefCorchorus capsularis45.8218.0694.27192reverse complement
CNT30525072Eragrostis tefPhaseolus vulgaris35.835.1391.33150forward
CNT30221722Eragrostis tefHordeum vulgare45.8219.5997.92192forward
CNT30588765Eragrostis tefMusa acuminata34.3720.6392.36144forward
CNT30552256Eragrostis tefOryza glaberrima45.8274.1398.44192forward
CNT30437708Eragrostis tefAegilops tauschii42.2456.7398.31177forward
CNT30257732Eragrostis tefAvena sativa32.465098.53136forward
CNT30266045Eragrostis tefBrassica rapa25.0623.7100105reverse complement
CNT30141326Eragrostis tefLolium perenne16.9521.3998.5971reverse complement
CNT3067537Eragrostis tefLeersia perrieri17.1824.4188.8972forward

Expression of CNT30352524

Peptides detected in this lncRNA

>peptide 1 (33 aa)
REVRNRWAVKRENRRRKARAKQPDEISFVSGKK*

>peptide 2 (50 aa)
VRYGIDGLSSGRIGGGRHERNNQTRFPSSLEKNRRSLIPYPNFSYSLFVP*

>peptide 3 (31 aa)
MGCQAGESEEEGTSETTRRDFLRLWKKIGAA*

Sequence

>CNT30352524
GCGTGAGGTACGGAATCGATGGGCTGTCAAGCGGGAGAATCGGAGGAGGAAGGCACGAGCGAAACAACCAGACGAGATTTCCTTCGTCTCTGGAAAAAAA
TAGGCGCAGCTTAATTCCTTATCCGAATTTTAGTTATTCATTATTTGTTCCATAATTTAACGGCTCAGATCTTAGTTGAGCTTTTACCTCTTAAGAGGTC
AAATGGGTACCGTAATAAGGCCACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACTTTAGCCATCTAGGGTGCGG
CACTCAACCGCTTCGCCTAGCAGCACAACGCTTGTGTTGCTCTCCCACAATCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTGCGG
GAATCGCTTTTGTCCAGCC