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Detailed information on CNT30352515


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30361226Eragrostis tefSorghum bicolor22.1823.3585.31177forward

Expression of CNT30352515

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MFAPRPLVARLLPGWNTLRHTLLPPRGVEDDDDGRAGGGGLAELLEAGLRVRPRHHVVPQLLQHLQPRSRSRLCSSRKAQSTESTAVLIKLRVSWLS

>peptide 2 (52 aa)
MQMKHIPVVDRGRVGLRAVEYVCSKALGRQVAPRVEHAAPHIVAAARRGGRR*

Sequence

>CNT30352515
AAAAGCAGCTGTACACACATCACACGCCAGTCGTGAGCACGTAGCATCCAGGCTAACAAAACTGACCAAGTAGCAGCACTACTAGCTAACAGTATCGGAG
TAGTACTGGTACTCCAACCACCATAAAAGACAAATTAAACAGGAACAGCGACGTTTTAATTAACACGTGGCCCCGGAAATCAACCCAGTACTGAGTTTTA
GATAACCACAAGGACCGGCAAACAAGGCCTGACAGAGACAGGCCAACACACAACAGGCTTCGTCATACCCCGATCTAGCACAGGCTAATGAGTATTTCCA
CTGCGCCCTTATCCGTTTCATCAGACCATGACAGTGCGTTAAATGGCCCCAAGTTGGTTGGATCTTTATAATTCGCAAAGGTAAAGTTTTAATCTTTCTG
GATCCAACTAAACATTCATCTGTGTAGATCATTAGCCAGTAACACGATGCAAATGAAGCACATACCAGTCGTAGACCGTGGGCGAGTTGGGCTGCGGGCG
GTCGAATATGTTTGCTCCAAGGCCCTTGGTCGCCAGGTTGCTCCCCGGGTGGAACACGCTGCGCCACACATTGTTGCCGCCGCGCGGCGTGGAGGACGAC
GATGACGGCCGGGCGGGAGGTGGTGGCCTTGCGGAGCTTCTCGAGGCCGGTCTCAGGGTGAGGCCCCGCCACCACGTCGTCCCACAGCTTCTCCAGCATC
TTCAACCTCGATCGAGATCACGATTATGCTCTTCTCGCAAGGCACAAAGCACTGAAAGCACCGCAGTACTAATTAAGCTAAGGGTGTCCTGGCTAAGC