Detailed information on CNT30351991


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678474Eragrostis tefSetaria viridis36.8444.7492.44238forward
CNT30445586Eragrostis tefSaccharum spontaneum44.4331.0992.68287forward
CNT30596300Eragrostis tefOryza meridionalis39.161488.93253forward
CNT30105840Eragrostis tefOryza longistaminata21.3618.1691.3138forward
CNT30101734Eragrostis tefOryza rufipogon39.1625.3388.14253forward

Expression of CNT30351991

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MKHFKIKKYVNSLHTVCPIYVSATTRACWTVHNCVVIKRRERYTAGWSLLGKKLGVRAGYIPCHCK*

>peptide 2 (57 aa)
MLDSSQLCRYKTTREIHSRLESFGQEIGSTCRLHSMSLQIMKMSLLRTNKKTPCDKT*

>peptide 3 (63 aa)
MLRNQVPLCVIHAEVEVRDSDFHSPVLLVVELHMPVYSYRTHVGCALYKRLASPFARTINCRL*

>peptide 4 (29 aa)
MWDVHCTRGWPVHLPGPSIADCSIGESSL*

Sequence

>CNT30351991
GGTACTTTCTTAAGGAACATAAATTAACTTACTTATTCTACCACCATATGGAGTAAGTGGTTTGTAGTTGAAGCTAAATAGCTGAGTGATATTATCAAAG
TTTGGATGCTGCGCAACCAAGTTCCACTGTGTGTAATTCATGCGGAAGTTGAAGTTCGTGATAGTGATTTTCACTCTCCAGTACTCCTTGTAGTTGAGCT
TCACATGCCAGTGTATTCTTATCGGACACATGTGGGATGTGCATTGTACAAGAGGTTGGCCAGTCCATTTGCCAGGACCATCAATTGCAGATTGTAGCAT
AGGTGAATCCTCACTGTGAAATACACCGAGCCCATTAGAACCTTTATACAGGGGGAAAAAAACTCAATATGAAGCATTTTAAGATTAAAAAGTATGTTAA
CTCACTTCACACAGTTTGTCCCATTTACGTTTCGGCAACCACAAGAGCATGTTGGACAGTTCACAATTGTGTCGTTATAAAACGACGAGAGAGATACACA
GCAGGTTGGAGTCTTTTGGGCAAGAAATTGGGAGTACGTGCAGGTTACATTCCATGTCACTGCAAATAATGAAAATGTCCTTGCTAAGAACCAACAAGAA
AACTCCCTGCGATAAAACTTAGACAAAACAACAACTGATACGGAAC