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Detailed information on CNT30351770


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 9e-75

BLAST vs NONCODE:
NONVVIT001317, E-value = 2e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672909Eragrostis tefSetaria viridis34.9448.2383.28341forward
CNT30521106Eragrostis tefSetaria italica34.9447.0383.28341forward
CNT30221823Eragrostis tefHordeum vulgare34.4343.0881.85336forward
CNT30393514Eragrostis tefTriticum turgidum19.9827.585.13195forward
CNT30555612Eragrostis tefOryza glaberrima34.5332.2585.46337forward
CNT30464658Eragrostis tefSaccharum spontaneum19.2620.586.17188forward
CNT30136970Eragrostis tefLolium perenne34.1252.1181.38333forward
CNT304238Eragrostis tefZea mays34.1251.3987.69333forward
CNT30648517Eragrostis tefRosa chinensis18.3435.184.36179forward
CNT30365555Eragrostis tefSorghum bicolor28.4857.0886.33278forward
CNT30597241Eragrostis tefOryza meridionalis30.1233.7584.35294forward
CNT30371468Eragrostis tefOryza glumipatula24.6920.9486.31241forward
CNT30104669Eragrostis tefOryza rufipogon34.6340.7785.21338forward
CNT30578612Eragrostis tefOryza barthii30.1225.9986.05294forward
CNT30585439Eragrostis tefEchinochloa crusgalli24.3937.684.45238forward
CNT30118025Eragrostis tefOryza nivara29.4124.8185.37287forward
CNT30556975Eragrostis tefPanicum hallii36.5844.6885.99357forward
CNT30551876Eragrostis tefOryza brachyantha34.5339.1987.54337forward

Expression of CNT30351770

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MTLAGVGERYRLHKQAMDTAEATKKTKEKETR*

Sequence

>CNT30351770
AGGAAATTAACATCCAAGAGAGTAGTGATTAGTGAAGCACATGCATCGGAAAACATGAACTGAAACTTTCTTCTTTATTATTAGAGACGTATAGTAGCCA
AGACAATAACACCAGTACTACTTAACAGGATCTAGTATTGTCGACGGATTTGTGGGATATGCTCTAGTACATATCATATCTCTGTATAGCCGGAGCTTGC
ATTCACATGTTTCTCACCCAACGATAGTTGACAATAACACCAGTACTACTTAACACGATCTAGTATTGTCGACGGATTTGTGGGATATGCTCTAGTACAT
ATCATATCTCTGTATAGCCGGAGCTTGCATTCACATGTTTCTCACCCAACGATAGTTGTAGTACTAGTCCTACGTACGTAGATGACTCTGGCTGGGGTCG
GAGAGAGATATCGCTTACATAAGCAGGCCATGGATACAGCAGAAGCAACCAAAAAAACAAAAGAAAAGGAAACTCGATGAGGTGACCCCAAGCAAAACCG
AACAGCAGGCAGGCAGTTCAGTACGGTTGCTGCTCACGCACCACCAGCGAGCGAGGCTAGATGCGCGCTTAATTACTCCTTGCCCGGTGGCTTGTAGGCG
ATGAAGCTGATGCACTGCACCTGCCTGACGTTGTCGAATCCGATGATGCGGATGTAGGAGCCCGGGTATGCGGCCTTGGCCTCCTCGAGCTCCTTGAGCA
CCTGGGTGGCGTCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAGTACCCCGGGGACTGGGAGTTCTCGCGGAACACGAA
GCCGACACTGCTGAACTCGAGGCAGGGGATCCAGTTGTTGCGGAGGAGGTACTCCACCTGCTTCAGGAAGTCCTCGGGGGTCAGCGGCGGCAGGTACGAC
AGCGTCTCGAACTTCTTGTTGTTGTCAACAGGCCACACCTGGAAACAAAAAATGGCATTGATATATCGAGGTCAGA