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Detailed information on CNT30351629


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701953Eragrostis tefQuercus lobata29.8835.5184.6998forward
CNT30377298Eragrostis tefArabidopsis thaliana29.8839.3687.7698forward
CNT30282455Eragrostis tefChenopodium quinoa32.017.5181.9105forward
CNT3071730Eragrostis tefQuercus suber29.8824.1483.6798forward
CNT30566785Eragrostis tefActinidia chinensis32.6240.2384.11107forward
CNT30311909Eragrostis tefCamelina sativa35.3724.5287.93116forward
CNT30468549Eragrostis tefSaccharum spontaneum39.0255.6593.75128forward
CNT302051Eragrostis tefZea mays23.1733.4890.7976forward
CNT30652736Eragrostis tefRosa chinensis21.6512.2687.3271forward
CNT30596757Eragrostis tefOryza meridionalis32.0145.2693.33105forward
CNT30371008Eragrostis tefOryza glumipatula28.9638.4692.6395reverse complement
CNT30107294Eragrostis tefOryza longistaminata39.0247.0694.53128forward
CNT30103405Eragrostis tefOryza rufipogon24.738.5791.3681reverse complement
CNT30175658Eragrostis tefVigna angularis27.7436.8484.6291forward
CNT30558210Eragrostis tefPanicum hallii39.6363.1191.54130forward

Expression of CNT30351629

Peptides detected in this lncRNA

>peptide 1 (38 aa)
AYFTQIHSRKKRSTGERGTRLTSEELEMSSRRKISLLE*

>peptide 2 (66 aa)
MMSESSWLISAWKAKVSVSAAMAEASRRRGGGEMAAARVRGRVWGGAGGGDFMVSDLGHGGSFPKVS

Sequence

>CNT30351629
GCCTATTTCACACAGATCCATAGCCGCAAAAAGAGGAGCACGGGCGAGCGGGGAACGAGACTTACATCGGAGGAGTTGGAGATGAGCTCGCGGAGGAAGA
TCTCCTTGTTGGAGTAGAAGGTGTTGATGATGAGCGAGAGCAGCTGGTTGATCTCGGCCTGGAAGGCGAAGGTTTCTGTCTCCGCGGCCATGGCGGAAGC
TTCCCGAAGGCGAGGAGGAGGCGAGATGGCGGCGGCTCGAGTGAGGGGAAGGGTTTGGGGTGGGGCGGGTGGAGGGGATTTTATGGTCTCGGACCTCGGT
CATGGCGGAAGCTTCCCGAAGGTCTCGG