Detailed information on CNT30351340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672859Eragrostis tefSetaria viridis2329.693.9466reverse complement
CNT30521306Eragrostis tefSetaria italica238.1993.9466reverse complement
CNT30221053Eragrostis tefHordeum vulgare239.1987.8866reverse complement
CNT30437365Eragrostis tefAegilops tauschii2319.1987.8866reverse complement
CNT3067646Eragrostis tefLeersia perrieri15.6821.8491.1145reverse complement
CNT30681536Eragrostis tefTriticum urartu2328.2189.3966reverse complement

Expression of CNT30351340

Peptides detected in this lncRNA

>peptide 1 (40 aa)
RTSFLHIPSGPQVRLYELLGTNSRGTQLGLVRLQLTSVSI*

>peptide 2 (29 aa)
GHPFCTSPLAPRSGYMNSLVPTAEEHNSG*

>peptide 3 (46 aa)
MAPSVMTSTSVAPPQGPAAPAAPASARSATAEGSGACRCGLLTTTRS

Sequence

>CNT30351340
CCGGACATCCTTTTTGCACATCCCCTCTGGCCCCCAGGTCAGGTTATATGAACTCCTTGGTACCAACAGCAGAGGAACACAACTCGGGCTAGTGAGATTG
CAGTTAACTTCGGTATCTATCTAGCTCCTTTCCCAAAGGAAGCTATGGCTCCCTCCGTGATGACGTCCACCTCAGTTGCTCCCCCCCAAGGGCCCGCCGC
TCCCGCAGCGCCGGCTTCGGCAAGGTCAGCAACGGCGGAAGGATCCGGTGCATGCAGGTGTGGCCTGTTGACAACAACAAGAAGTTC