CANTATAdb - search

Detailed information on CNT30350935

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30616460	Eragrostis tef	Sesamum indicum	45.83	23.76	80.06	341	forward
CNT30307041	Eragrostis tef	Triticum aestivum	54.84	76.12	84.56	408	forward
CNT30399358	Eragrostis tef	Triticum turgidum	47.72	61.1	85.92	355	forward
CNT30468540	Eragrostis tef	Saccharum spontaneum	53.49	45.96	85.43	398	forward
CNT30713436	Eragrostis tef	Malus domestica golden	22.04	50.93	85.37	164	forward
CNT30625277	Eragrostis tef	Daucus carota	26.88	32.57	82.5	200	forward
CNT30154770	Eragrostis tef	Prunus persica	38.17	80.91	82.39	284	forward
CNT30705862	Eragrostis tef	Prunus avium	34.14	23.92	83.46	254	forward
CNT30642025	Eragrostis tef	Cannabis sativa	38.17	55.36	82.39	284	forward
CNT3035160	Eragrostis tef	Cucumis melo	36.16	53.37	81.78	269	forward
CNT30330871	Eragrostis tef	Dioscorea rotundata	20.83	21.44	85.81	155	forward

Expression of CNT30350935

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDCIPLRMESNHLVKGEGRTAYARHMAKRMHLN*

Sequence

>CNT30350935
GTTGGACTATAGTTCGGCGAAGTTGGGCTGTAACTTGGTGATGTCGGGCTGTAACCAGGAGAAGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGAGG
GCGATGTAGGGCTGTATGAGGGTGATGTTGGGCTGTATGAAGGAGATGTCGGGCTGTAGGATGGGGATGTTGGGCTGTACGAAGGAGATGTAGGGCTGTA
TGAAGGAGATGTAGGGCTGTATGAAGGAGATGTTGGGCTGTAAGATGGTGATGTGGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGCGAGGTAGGA
CTATAAACCGGTGAGGTGGGACTGTAACTCGGAGAGGTGGGACTATAACTTGGTGAGGTGGGACTGTAACTCGGAGAGGTGGGACTATAACTCGGTGAGG
TGGGGCTGTAGCTTGGCGATGTTGGACTATAGCTCGGAGATGTAGGGCTGTAACTTGGTGATGTGGGCGAGTATGACGGACTGGTGGGTGAGTATGATGG
ACTTGTTGGCGAGTAAGTCGGACTTGTTGGGCTATATGTAGGAGAGCCTGGTGTATATGATGGTGAGGTTGGACTATAGTTTGGTGACGCAGGGCTATAT
CCAGGTCCAGGGCTGAAATTTGGAGAAGATGGACTGTATCCCCCTGAGGATGGAGAGTAACCACCTGGTGAAGGGAGAGGGGAGAACTGCATATGCCCGA
CATATGGCGAAAAGGATGCATCTGAATTAATGGGGGAAGCCCTG