Detailed information on CNT30350933


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Eragrostis tefNymphaea colorata38.1939.582.27299forward
CNT30468525Eragrostis tefSaccharum spontaneum76.1270.785.4596forward
CNT3016767Eragrostis tefZea mays55.9457.9482.65438forward
CNT30688581Eragrostis tefTriticum urartu54.2873.1586.35425forward
CNT30366537Eragrostis tefSorghum bicolor60.4154.2484.99473forward
CNT30370935Eragrostis tefOryza glumipatula66.1653.5184.17518forward
CNT30573925Eragrostis tefVitis vinifera38.8337.1679.93304forward
CNT30584421Eragrostis tefEchinochloa crusgalli60.4158.6883.09473forward
CNT30497905Eragrostis tefDigitaria exilis83.472.3183.77653forward
CNT30558075Eragrostis tefPanicum hallii69.0968.5781.7541forward

Expression of CNT30350933

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDCIPLRMESNHLVKGEGRTAYARHMAKRMHLN*

>peptide 2 (36 aa)
AKDCTWPMKDCSLVKLDYSSAKLGCNLVMSGCNQEK*

Sequence

>CNT30350933
ATGCGAAGGACTGTACTTGGCCGATGAAGGATTGTAGCTTGGTGAAGTTGGACTATAGTTCGGCGAAGTTGGGCTGTAACTTGGTGATGTCGGGCTGTAA
CCAGGAGAAGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGAGGGCGATGTAGGGCTGTATGAGGGTGATGTTGGGCTGTATGAAGGAGATGTCGGGC
TGTAGGATGGGGATGTTGGGCTGTACGAAGGAGATGTAGGGCTGTATGAAGGAGATGTAGGGCTGTATGAAGGAGATGTTGGGCTGTAAGATGGTGATGT
GGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGCGAGGTAGGACTATAAACTGGGGAGGTGGGACTGTAACTCGGAGAGGTGGGACTATAACTCGGT
GAGGTGGGGCTGTAGCTTGGCGATGTTGGACTATAGCTCGGAGATGTAGGGCTGTAACTTGGTGATGTGGGCGAGTATGACGGACTGGTGGGTGAGTATG
ATGGACTTGTTGGCGAGTAAGTCGGACTTGTTGGGCTATATGTAGGAGAGCCTGGTGTATATGATGGTGAGGTTGGACTATAGTTTGGTGACGCAGGGCT
ATATCCAGGTCCAGGGCTGAAATTTGGAGAAGATGGACTGTATCCCCCTGAGGATGGAGAGTAACCACCTGGTGAAGGGAGAGGGGAGAACTGCATATGC
CCGACATATGGCGAAAAGGATGCATCTGAATTAATGGGGGAAGCCCTGATGTTTGGACTCAGCAGATAACTTGGTGACATCAT