Detailed information on CNT30349956


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002948, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Eragrostis tefOryza sativa57.9273.5392150forward
CNT30523179Eragrostis tefSetaria italica10093.8492.66259forward
CNT3089385Eragrostis tefVigna radiata25.118.4789.2365reverse complement
CNT30554291Eragrostis tefOryza glaberrima79.9231.993.24207forward
CNT30143656Eragrostis tefMedicago truncatula25.15.8789.2365reverse complement
CNT30256205Eragrostis tefAvena sativa72.5915.0882.98188forward
CNT30612419Eragrostis tefArabis alpina25.130.6687.6965reverse complement
CNT3015666Eragrostis tefZea mays41.313.3985.05107forward
CNT30480070Eragrostis tefArabidopsis halleri20.4613.2888.6853reverse complement
CNT30596976Eragrostis tefOryza meridionalis79.9271.6391.79207forward
CNT30370879Eragrostis tefOryza glumipatula62.1669.793.17161reverse complement
CNT30646316Eragrostis tefCannabis sativa39.3826.7788.24102reverse complement
CNT30319789Eragrostis tefAsparagus officinalis19.6924.5290.251reverse complement
CNT30147808Eragrostis tefBrachypodium distachyon36.296.2687.2394reverse complement
CNT30100013Eragrostis tefOryza rufipogon76.8339.6491.96199reverse complement
CNT30577476Eragrostis tefOryza barthii79.9218.6791.79207forward
CNT30496834Eragrostis tefDigitaria exilis20.081.5594.2352forward
CNT30174954Eragrostis tefVigna angularis25.125.3990.7765reverse complement

Expression of CNT30349956

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSTSCNFFSGSSSRKNSKVKRAWPGAISGWVTDREVVPGCARVRTKCAEKTCVGLWG*

>peptide 2 (33 aa)
MGDRPGSRSRVCTSEDKVRRKDMCWSVGLVLMS*

>peptide 3 (45 aa)
CDIPAQGLIGLIEYSCQQVATSFPEAHLERTPRLSVLGLEQFRDG*

Sequence

>CNT30349956
TGTGACATCCCAGCCCAAGGCTTAATAGGATTGATAGAATACTCATGTCAACAAGTTGCAACTTCTTTTCCGGAAGCTCATCTCGAAAGAACTCCAAGGT
TAAGCGTGCTTGGCCTGGAGCAATTTCGGGATGGGTGACCGACCGGGAAGTCGTTCCCGGGTGTGCACGAGTGAGGACAAAGTGCGCAGAAAAGACATGT
GTTGGTCTGTGGGGTTAGTCTTGATGTCCTAGAGAGCTGCCAGGCGTAAGCGGGCCCGG