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Detailed information on CNT30349660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693805Eragrostis tefOryza sativa20.4120.8991.2580forward
CNT30673415Eragrostis tefSetaria viridis13.5226.510053forward
CNT30389677Eragrostis tefTriticum turgidum26.7917.889.52105forward
CNT30553860Eragrostis tefOryza glaberrima20.4121.2291.2580forward
CNT30681819Eragrostis tefTriticum urartu26.7917.590.48105forward
CNT30595554Eragrostis tefOryza meridionalis18.6227.9795.8973forward
CNT30369218Eragrostis tefOryza glumipatula18.6220.0595.8973forward
CNT30576573Eragrostis tefOryza barthii19.6427.990.9177forward
CNT30116825Eragrostis tefOryza nivara20.4114.0691.2580forward
CNT30556906Eragrostis tefPanicum hallii23.9816.2195.7494forward

Expression of CNT30349660

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MTMVVVVAAASTSGYIPQPLQPLPQLQLEPHPHLPPQQDILSISSTQTEEEEGEVVLLVVLVLLV

>peptide 2 (58 aa)
MPPELLQKHSDDHGGGGGSRLDVRVHPATIAAVAAAAAGAAPALATAARHPLDLKHTN*

Sequence

>CNT30349660
ACAGCCTCTTATTTAGACGCTCGTAAATAAAGCTGGGGTCCTCGATCGTGCCCGGGGGCGGCGCGTGGCTGCTTCAGTTGCAGCTGCAGCAGGAGCAGCC
GCAGCTGGTGCCGCACTTGCAGGTGTTGCAGTCGCAGCCGCCGTTCTCGGCCTCCGCCATCATCATGCCGCCGGAGCTCCTGCAAAAGCACAGCGATGAC
CATGGTGGTGGTGGTGGCAGCCGCCTCGACGTCAGGGTACATCCCGCAACCATTGCAGCCGTTGCCGCAGCTGCAGCTGGAGCCGCACCCGCACTTGCCA
CCGCAGCAAGACATCCTCTCGATCTCAAGCACACAAACTGAAGAAGAAGAAGGTGAAGTAGTGCTTCTTGTTGTGCTTGTGTTGCTTGTGAT