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Detailed information on CNT30349655


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LWR0|TIP42_ORYSJ, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30291823Eragrostis tefTriticum aestivum18.0247.9783.1142forward
CNT30223457Eragrostis tefHordeum vulgare7.9921.1487.363forward
CNT30130608Eragrostis tefLolium perenne27.1622.3185.51214forward

Expression of CNT30349655

Peptides detected in this lncRNA

>peptide 1 (47 aa)
KHYVNIHFIFTWLTTPETNPDKKMDLRGQNNNFKMEQQCAGTILQQP*

>peptide 2 (41 aa)
MRLVDQEQRLIDESSKGPAKEWTHPIDPVVGPDAGGQGWSK*

>peptide 3 (51 aa)
MPVARAGPNDLAGFMDAPEKLPPARVLAPTMRPVSSGPMVRTELRGSTIIA*

>peptide 4 (29 aa)
MCNHCERLNYQKAPLSRGSCVLLTKNSDS*

Sequence

>CNT30349655
AAAACATTACGTCAACATACATTTCATCTTTACATGGCTGACCACGCCTGAAACAAATCCTGATAAAAAAATGGACCTAAGAGGCCAAAATAACAATTTT
AAGATGGAACAACAGTGCGCCGGAACTATTTTACAACAACCTTAATTACCTTGTCCAGTATATACACTATGATACTACGTAATGTATGTGCAACCATTGC
GAGAGGCTTAACTATCAAAAGGCCCCATTAAGCAGAGGCTCATGCGTCTTGTTGACCAAGAACAGCGACTCATAGACGAATCCAGCAAGGGGCCCGCCAA
GGAGTGGACCCACCCAATAGACCCAGTGGTGGGTCCAGATGCCGGTGGCCAGGGCTGGTCCAAATGACCTAGCAGGGTTCATGGATGCGCCGGAGAAGTT
GCCACCGGCGAGGGTGTTGGCGCCAACGATGAGGCCGGTGAGCAGCGGGCCGATGGTGCGGACCGAGCTCCGCGGGTCGACGATCATTGCATAGGTGACA
AAAAGGAGGGAGAAGGTGAGGACGAGCTCGGCCAGCACGGCCCGCACGCAGCCGGCGTCCTGGGCGTCGCCGCCGTTGTCGCACTTGTCCACAAGCTTGG
CCATCAGCTTCGACATGGATGACGGACGGATGGATTCCAAGCCTTGGCGTCCCTGTTCTTGGCAGGGGATGAGGATGAGGTGAAAGTGCAGGGACCGCTT
GTTCGCTTGTTGGTACGACGTAAAAGCGCACGAAAAAAGTGCACCTGGATATTTTAGTTTGTGGATGGTGGGGGCACCCGGCACAGGC