Detailed information on CNT30349523


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695924Eragrostis tefOryza sativa29.885.5591.09101forward
CNT30554854Eragrostis tefOryza glaberrima29.887.0991.09101forward

Expression of CNT30349523

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLREHWSGTTGIYGVHQPTNHHKAAAKVRGNDVFSEFF*

>peptide 2 (46 aa)
KLRILLPFSPRDQLLDLSPSSISCSPPLKLAHSVRTGLCRRAALED*

>peptide 3 (38 aa)
AKDSSSLLSKRSAARPVPFLYLLLPTSQACSQRSNWFM*

>peptide 4 (32 aa)
MEFINQPTITKLRRRLGEMTSSPSFFRVNCKFH

Sequence

>CNT30349523
AAGCTAAGGATTCTTCTTCCCTTCTCTCCAAGAGATCAGCTGCTCGACCTGTCCCCTTCCTCTATCTCCTGCTCCCCACCTCTCAAGCTTGCTCACAGCG
TTCGAACTGGTTTATGTAGACGGGCGGCATTGGAGGATTGAAGACAACAGAGTGGTGCGCCAGCATTGAAGAGAGCTCATCAGCTGTAGGAAGGGCTATT
CAATGCTGAGGGAGCACTGGTCTGGTACAACCGGGATTTATGGAGTTCATCAACCAACCAACCATCACAAAGCTGCGGCGAAGGTTAGGGGAAATGACGT
CTTCTCCGAGTTTTTTTAGGGTTAATTGTAAATTCCAC