« Back to Eragrostis tef search


Detailed information on CNT30349481


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597167Eragrostis tefOryza meridionalis23.2115.791.7597forward
CNT30371436Eragrostis tefOryza glumipatula23.2113.2392.7897forward
CNT30104555Eragrostis tefOryza rufipogon23.2113.3191.7597forward

Expression of CNT30349481

Peptides detected in this lncRNA

>peptide 1 (32 aa)
FLNMFLILLCYQLWALLTVKPTIILYGTLTRQ*

>peptide 2 (34 aa)
FFEHVSDITLLSALGTFNRQTHNHSVRNTYKTIK*

Sequence

>CNT30349481
TTTTTTGAACATGTTTCTGATATTACTCTGTTATCAGCTTTGGGCACTTTTAACCGTCAAACCCACAATCATTCTGTACGGAACACTTACAAGACAATAA
AATGAAGCAATCAAGAATGGATACTGCAGGTTCACTCTCCCCAAAGTGGTTCATGATCACATAAGATGATACAAATGCACTGACAACAAAGTTACATCCA
AATATTTTTCTTCAGTTGGTGGGCATCTAGGTACAGAACTCCCGGCCGTCAATAATCAGCCGCATCACCATTTCCAGAAGACGTTTGAGCCGCACTTGTA
CTTCTCCTTCCCCTCGCACTCAATCTCGAGGTCATCAGTGATGAACGGTACTTTCTGCAAAAACACAACAACAGACAACCATGATACACGATCGGAATTA
AGATAGTTCCGAGGAGAG