Detailed information on CNT30349480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697529Eragrostis tefOryza sativa27.3516.2691.0467forward
CNT30676304Eragrostis tefSetaria viridis27.7613.5591.1868forward
CNT30523702Eragrostis tefSetaria italica75.513785.41185forward
CNT30180208Eragrostis tefSecale cereale75.5143.9480.54185forward
CNT30385322Eragrostis tefTriticum turgidum26.1218.7793.7564forward
CNT30436158Eragrostis tefAegilops tauschii26.1221.4893.7564forward
CNT30252158Eragrostis tefAvena sativa23.2714.9291.2357forward
CNT30658022Eragrostis tefTriticum dicoccoides26.1223.793.7564forward
CNT30137831Eragrostis tefLolium perenne39.5922.5184.5497forward
CNT304621Eragrostis tefZea mays72.2457.2889.27177forward
CNT30680368Eragrostis tefTriticum urartu26.1224.3393.7564forward

Expression of CNT30349480

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LLALLFSRYSSMTPALADPVVAVTANTAARPRRAARRRTAAPPRRA*

>peptide 2 (61 aa)
LVGLALLQVLIDDAGFGRSGGGRDSEHGRKAEESRAAADCGTAAAGLSPTTLEFTPAMSSC*

Sequence

>CNT30349480
CCTTGTTGGCCTTGCTCTTCTCCAGGTACTCATCGATGACGCCGGCTTTGGCCGATCCGGTGGTGGCCGTGACAGCGAACACGGCCGCAAGGCCGAGGAG
AGCCGCGCGGCGGCGGACTGCGGCACCGCCGCGGCGGGCTTGAGCCCGACAACGCTGGAGTTCACGCCGGCCATGTCCTCTTGCTGATGTGTCCTTGGGC
TATGTGTGTGCTCGTCGTTCCTGGTTGGCAGCAGGGAGTGGGGTG