Detailed information on CNT30349424


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EN80|RR19_ORYNI, E-value = 1e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676816Eragrostis tefSetaria viridis33.6466.5287.76147reverse complement
CNT30304119Eragrostis tefTriticum aestivum78.9598.5794.49345forward
CNT30220592Eragrostis tefHordeum vulgare24.4943.597.2107forward
CNT30391503Eragrostis tefTriticum turgidum35.0130.693.46153forward
CNT30590093Eragrostis tefMusa acuminata30.4321.7785.71133forward
CNT30447572Eragrostis tefSaccharum spontaneum100.9225.6293.65441forward
CNT3018340Eragrostis tefZea mays29.989.8397.71131forward
CNT30231593Eragrostis tefAnanas comosus24.0313.3284.76105forward
CNT30649878Eragrostis tefRosa chinensis17.8535.6291.0378forward
CNT30684618Eragrostis tefTriticum urartu82.1537.6793.87359forward
CNT30719848Eragrostis tefTriticum spelta45.7781.9794.5200reverse complement
CNT30415027Eragrostis tefPapaver somniferum32.9536.9284.03144forward

Expression of CNT30349424

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEVRINRIMMSGKNRKSLSWIRGGCSQVDQGSGL*

Sequence

>CNT30349424
TGTTTGTTTCTATTATGAATCGCGATTGTATGGCCAACCATTGCGGGTAGAATGCTAGATGCCCGGGACCACGTTACTATTGTTTCTTTCTCCTCCTTCA
TATTGACCTTTTCGATTTTTGTCAATAAATGACGAGCTACAAAAGGATTCGTTTTTTTTCGTGTCACAGCTGATTACTCCTTTTTTTTATTTTAAAGAGT
GGCATCCTATGTCCACTATCTCGATCGAAGTATGGAGGTCAGAATAAATAGAATAATGATGAGTGGAAAAAATAGAAAATCCCTTAGCTGGATAAGGGGC
GGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATTACATTATTGCAATGCAATTTTTCA
TATTCCTAGTTATGTATTTACTTACGACGACGAAGAA