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Detailed information on CNT30349409


BLAST search results

BLAST vs Swiss-Prot:
sp|P24805|TSJT1_TOBAC, E-value = 4e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179357Eragrostis tefSecale cereale2429.5987.46287forward
CNT30386304Eragrostis tefTriticum turgidum14.5532.3491.38174forward
CNT30553525Eragrostis tefOryza glaberrima16.9728.6793.6203forward
CNT3017553Eragrostis tefZea mays10.247.2994.26122forward
CNT30596052Eragrostis tefOryza meridionalis19.0641.8392.54228forward
CNT30101149Eragrostis tefOryza rufipogon18.8141.2892.44225forward
CNT30604057Eragrostis tefOryza punctata9.5328.6494.74114forward

Expression of CNT30349409

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSSSPQNILVRMKDSIRTSSSSPFHSRASIDSSGS*

>peptide 2 (53 aa)
MELILVKVSTLKVAPHMTPSLSTRGMALSLFMGCSKLLSPPSLWNMQPTGKGA*

>peptide 3 (59 aa)
FEMNSYSFIRRVQQPSPQATRTREFTMPEERDERKVVQNEKKKKEREKENEGQMKILKI*

>peptide 4 (49 aa)
MTADPSAARPQKSGTPPSALSAAKTAPDLLSKTTKAKEPDRSLTTWSAG*

Sequence

>CNT30349409
GATTTGAAATGAACTCTTATTCATTCATTCGTCGTGTTCAACAACCAAGTCCGCAAGCCACACGCACCAGAGAATTTACAATGCCAGAGGAGAGAGATGA
GAGGAAAGTAGTACAAAACGAAAAAAAAAAGAAAGAAAGAGAGAAAGAAAATGAAGGCCAAATGAAAATCCTTAAGATCTGAAACGAAGGAAGCTTGCTG
AAGACACAACCGAGCGAGGTTCAGGGGCAGCGGACGGTGGCGGGCGCGGCGGACATGGCCGTGATTGATCGAGCAGTGCAGTGCAGCAGCTAGAGTGGAG
TGGAGTGGAGTACTAGATTAGAGGGCGGCGTCGTCCCAGGCCGCCCAGTTGGTGGCGCTGCCGACGCGCGGCATGGAGTTGATCTTGGTGAAGGTGTCGA
CCTTGAAGGTGGCGCCGCACATGACGCCCTCGCTGTCGACGCGGGGCATGGCCTTGAGCCTGTTCATGGGGTGCTCGAAGCTCTTGAGCCCGCCCTCGCT
GTGGAACATGCAGCCCACGGGGAAGGGCGCGTAGGACTTGCCGCAGCCGCGCTTGACGACGTCGCGGTCGTCGCAGATGACGGCGGATCCGTCGGCCGCG
AGGCCCCAGAAGAGCGGCACGCCGCCGTCGGCGCTGAGCGCGGCGAAGACGGCGCCGGACTTGTTGTCGAAGACGACGAAGGCGAAGGAGCCCGACAGGT
CCTTGACGACCTGGTCCGCCGGGTAGGGCCCGCGGTCGCGCAGCGTGCGGTACGCCTCGATCACCAGCAGCGCCTCGTTCGTGGACTTGTTGCAGAGGCC
GTACTGCCGGATCAGGCTGCTCAGGTTGTCGAGGCGGCCCAGGAACACGCAGAAGATGTCGTCAAGCCCGCAGAACATCCTAGTACGAATGAAGGATTCG
ATCAGAACATCCAGTTCATCACCATTTCATTCTCGAGCAAGCATCGATTCCTCTGGTTCTTAGTTACCTCTGGTATCCGGCTGCGGTGCGCGACGCGTGC
GCTCCGACGCAGGCGAGCGCGGCGCCGCCTCCGAAGGAGGTGGAGAAGGCGTCGGCGGGGTTGGCGGCGTGGAAGTCGCGGAGGATCTCGTCGGGGTTCT
TGGGCTTGGCGGCGCCGGCGCGGGGGCTGTTCAGCTCCTGCGGCGCGTGCGCCACCTGCTTCTGGAAGATGGCCAACATCTTTCTTTCTTTCTTCC