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Detailed information on CNT30349330


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 7e-98

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690921Eragrostis tefOryza sativa30.1929.0991.88468forward
CNT30673590Eragrostis tefSetaria viridis29.4256.2391.45456forward
CNT30529251Eragrostis tefEucalyptus grandis29.5551.6391.05458forward
CNT30180697Eragrostis tefSecale cereale30.0626.5293.13466forward
CNT30301827Eragrostis tefTriticum aestivum29.8759.992.87463forward
CNT30226487Eragrostis tefHordeum vulgare29.5574.3591.92458forward
CNT30395844Eragrostis tefTriticum turgidum30.0630.1292.92466forward
CNT30242975Eragrostis tefAvena sativa29.9462.8793.1464forward
CNT30475689Eragrostis tefSaccharum spontaneum29.8162.6990.69462forward
CNT30141380Eragrostis tefLolium perenne29.9450.0593.75464forward
CNT30364225Eragrostis tefSorghum bicolor30.0661.2490.77466forward
CNT30107350Eragrostis tefOryza longistaminata30.1954.2391.67468forward
CNT30150050Eragrostis tefBrachypodium distachyon30.0634.8391.42466forward
CNT30100520Eragrostis tefOryza rufipogon29.7446.4791.97461forward
CNT30583684Eragrostis tefEchinochloa crusgalli29.121.4991.35451forward
CNT30115854Eragrostis tefOryza nivara30.1962.0791.03468forward

Expression of CNT30349330

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PNQSTIISLAHNHNRIKNQTDETEQSTNIGSNVTY*

>peptide 2 (52 aa)
MSLCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICMPPLRRRTR*

>peptide 3 (46 aa)
MSLCWSGGMPSLSWIFALTLSMVSDDSTSRVMVLPVRVFTKICICK*

Sequence

>CNT30349330
CCTAATCAATCCACAATAATTTCACTAGCGCACAACCATAACAGAATTAAAAACCAGACGGATGAAACTGAACAGAGCACAAATATAGGTTCAAACGTCA
CTTATTAAGCTGCTGCGCCTCTTAAATTGTTTAAGTACCACATAAGCATATAACCAAACAGCACTTCGACACAACCCACAAGCTGAACTTCAAAGAGAAC
ACCAGACATCATAGGCACCAGGCGACCCAGGTACAGTAGCTTCAACCAAAGCAGTCTACTGACCACCACGTAGGCGGAGCACCAGGTGGAGGGTGGACTC
CTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG
ATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCA
GGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTG
GTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC
TTCACAAAGATCTGCATCTGCAAGTAAGAACAACCAAACCAAGGTCAGGTATCTAGCAGGACCAATAAAACTGAACAGCAGCACACATCTACACGGATCA
TGCAACGTACAACAAAAAGAGTCTGGATCAAGACACGCTTAACAATTTCATCCATGCTGAACCAGTAAATCGGAAACATATCATCCTAGAGAGATAACGA
TCAAAAGGCAGTAACATTTAACCTTATCAACACCATACAGGTAATCTGTGCATGCATATATCGACTACATAAACCTAGCCCAGTACATAGCAATAATACC
TGATCTAGAGGGACAAATCAGTCAGACAACGGCTAAACAGGACGCTCAAGCTATCAGTTTCAGACATGATGAGCCAGTGATAAACGGTAGCAAGATAAAA
TCAGATAACGGCAGGTATCGATACAAGATGAACTAGGCTGAACAAAGTATGTGCATCGAGAGCAGATCTAACTCCAGACAAAAAGCCATATAAATTACGT
GTACGATTTCATCCGGAAAATAGCCAAAAAACAGCCTAGGGTTACCAGATCAACAGCTTCCGACACAAAAATCCGCAGGCGCATCAACAATTCATGAACG
TCACCTAACAGATCTACACCAAAACTTCACCACCGAGCCATCCTAACAGAACAATTCAGATCATACATGTCTACTCCATCACCGCCTAACTAACAGGTAA
CCACCTACGAATCGAACCGAACCGAACCAGGCAGATCTAGACGAGAACGAAGAAGAGCAGATAGAAGGGGAAGGCGCCGTACCTTGACGAGGCGGAGGGA
TCGACGAGCCTCGCGAGAAGGATTGGGGATCGGGTTGTGTTCACGAATCA