Detailed information on CNT30348730


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006227, E-value = 5e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677365Eragrostis tefSetaria viridis83.2757.4689.22204reverse complement
CNT30524398Eragrostis tefSetaria italica55.5117.6294.85136reverse complement
CNT30244472Eragrostis tefAvena sativa73.4724.6982.78180forward

Expression of CNT30348730

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MEGKWTTTLMVIMCLVILGLNVNLATASECSCCEAARAKACCFACIAAGGSDNVCKNTCCFPC

>peptide 2 (41 aa)
MSTWPPLQSVAAAKPHGQKHVVLLVLLRVALTMSARTLVVSH

Sequence

>CNT30348730
CACAAAACCAATAAACTTAGCTAGGTAACCAAGGAAGGTAGCAGCAAGAGGAGGCAATGGAGGGAAAGTGGACTACCACTTTGATGGTGATCATGTGCCT
GGTCATCTTGGGCCTCAATGTCAACTTGGCCACCGCTTCAGAGTGTAGCTGCTGCGAAGCCGCACGGGCAAAAGCATGTTGTTTTGCTTGTATTGCTGCG
GGTGGCTCTGACAATGTCTGCAAGAACACTTGTTGTTTCCCATGT