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Detailed information on CNT30348363


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-52

BLAST vs NONCODE:
NONGMAT001327, E-value = 4e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Eragrostis tefOryza sativa38.9648.1293.09217forward
CNT30671259Eragrostis tefSetaria viridis45.2461.6198.41252forward
CNT30523218Eragrostis tefSetaria italica56.0157.1496.47312forward
CNT30317753Eragrostis tefCorylus avellana50.9940.882.04284forward
CNT30546681Eragrostis tefIpomoea triloba43.4551.4982.64242forward
CNT30703567Eragrostis tefQuercus lobata42.9147.3382.01239forward
CNT30375418Eragrostis tefArabidopsis thaliana15.4436.4487.2186forward
CNT30617135Eragrostis tefSesamum indicum56.3731.3185.03314forward
CNT3069058Eragrostis tefQuercus suber40.2225.681.7224forward
CNT30196946Eragrostis tefPisum sativum25.6719.9780.42143forward
CNT3042757Eragrostis tefPrunus dulcis51.1747.0382.81285forward
CNT30178072Eragrostis tefSecale cereale56.1957.7594.89313forward
CNT30286550Eragrostis tefTriticum aestivum56.1951.8296.49313forward
CNT30221015Eragrostis tefHordeum vulgare43.8146.396.31244forward
CNT30382783Eragrostis tefTriticum turgidum55.6655.4695.48310forward
CNT30565712Eragrostis tefActinidia chinensis27.2950.8488.16152forward
CNT3086297Eragrostis tefVigna radiata52.0624.9482.41290forward
CNT30553196Eragrostis tefOryza glaberrima39.1439.0795.41218forward
CNT30435717Eragrostis tefAegilops tauschii56.1951.5796.49313forward
CNT30244338Eragrostis tefAvena sativa53.553.6995.64298forward
CNT30656490Eragrostis tefTriticum dicoccoides56.0150.4995.83312forward
CNT3059678Eragrostis tefArabidopsis lyrata28.933.4783.23161forward
CNT3082467Eragrostis tefBrassica juncea47.7637.180.83266forward
CNT30444399Eragrostis tefSaccharum spontaneum56.5552.8596.51315forward
CNT30135649Eragrostis tefLolium perenne55.6660.4394.19310forward
CNT304209Eragrostis tefZea mays38.7837.1194.44216forward
CNT30229571Eragrostis tefAnanas comosus25.8534.9591.67144forward
CNT30679384Eragrostis tefTriticum urartu56.1951.6595.21313forward
CNT30720165Eragrostis tefTriticum spelta25.8530.793.06144forward
CNT30620798Eragrostis tefCajanus cajan24.0625.6783.58134forward
CNT30596905Eragrostis tefOryza meridionalis36.6233.5593.63204forward
CNT30357929Eragrostis tefLactuca sativa52.0664.7379.66290forward
CNT30370989Eragrostis tefOryza glumipatula50.8145.2895.41283forward
CNT30645456Eragrostis tefCannabis sativa45.633.1283.86254forward
CNT30325970Eragrostis tefAsparagus officinalis41.2933.3384.35230forward
CNT30331117Eragrostis tefDioscorea rotundata54.7632.2178.69305forward
CNT30147953Eragrostis tefBrachypodium distachyon56.7336.3694.3316forward
CNT30101647Eragrostis tefOryza rufipogon53.1431.7696.96296forward
CNT30577582Eragrostis tefOryza barthii36.6232.0893.63204forward
CNT30581397Eragrostis tefEchinochloa crusgalli38.7836.894.44216forward
CNT30496126Eragrostis tefDigitaria exilis55.6645.5994.84310forward
CNT30117618Eragrostis tefOryza nivara39.1448.4495.87218forward

Expression of CNT30348363

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSIQLATNTTQRSYTQGIITARNLFLTTIWNPTSAEASDPGFDQPPKP*

>peptide 2 (59 aa)
MSPEMRFTPPLLASLRIAGLVMPWMLSRSTLRWRLAPPLPRPLPPLPRPDMVALTTAAT*

Sequence

>CNT30348363
CACAGATAACATACGTTGAATCAATTTATCAGCATTCAGTTCTCGAATTCAACAGATGAGCATCCAATTGGCTACAAACACGACGCAACGAAGCTACACA
CAGGGCATCATCACAGCACGCAACCTTTTCCTAACCACTATCTGGAACCCTACCAGCGCAGAGGCAAGCGACCCGGGATTCGATCAGCCGCCGAAGCCGT
AGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCCGTGTAGGTGACGGCGTCGCGGATGAC
GTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGATCGCCGGC
TTGGTTATGCCCTGGATGTTGTCGCGGAGCACCTTGCGGTGGCGCTTGGCGCCGCCCTTGCCGAGACCCTTGCCTCCCTTGCCGCGGCCCGACATGGTTG
CTTTGACGACGGCGGCAACTTGATTTGTGGGAGTAGGATTTGTGGATTTTGCGAGAT