« Back to Eragrostis tef search


Detailed information on CNT30348098


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FLC0|PER52_ARATH, E-value = 5e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30307233Eragrostis tefTriticum aestivum48.5960.1287.34395forward
CNT30554242Eragrostis tefOryza glaberrima19.5633.1285.53159forward
CNT30688208Eragrostis tefTriticum urartu44.494.586.98361forward
CNT30368355Eragrostis tefSorghum bicolor48.9570.6987.19398forward
CNT30102121Eragrostis tefOryza rufipogon25.9526.7187.68211forward

Expression of CNT30348098

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ALDKLNKKKCTCSKYIHEETPVTFSSCDMKKPDHQH*

>peptide 2 (28 aa)
MRVVDLAKPAMADRCLIGLDTSRGQCKLG

>peptide 3 (57 aa)
MWLRKNWHCDLPMVCAPDSAVMSRADRPCLLNIWMSVARLDVGPGRLLLARFGHDLE*

>peptide 4 (44 aa)
MAVTKSALNWPGLVLYCLTSVSCEPLLKSSWSECSRPRCCTRFW*

Sequence

>CNT30348098
GCCTTGGACAAACTTAACAAAAAAAAGTGTACGTGTAGTAAATACATACATGAAGAGACCCCAGTTACATTCTCTTCATGTGACATGAAAAAACCTGATC
ACCAACATTAGCCCCTTGGTTCCCAAGGCCTTGATACTGAATGATCATCAGTTGGCCCTCCTGCAGTTGAGCCTGATCTCGGTCGCCGTCGAGGCCGCCG
GCAGCAGGTTCCCCATCTTGATCATGGCCGTGACGAAGTCGGCGTTGAACTGGCCCGGGTTGGTGCTGTACTGTCTCACCAGCGTGTCCTGCGAGCCGTT
GTTGAAGAGCTCCTGGTCGGAGTGCAGCAGGCCGCGCTGCTGCACCAGGTTCTGGTAGTAGGCGTTGTCGAAGCCGTCGGCGGTCTGCACGTCGAACGGC
GCGAGGTTGCTGTCGCCGCCGGAGAGCGGGCACGTCTGCTGCCGCAGCTTCGCGAAGGTGGCGTTGATGTTTTTCTCGTTGTAGATGTGGTTGCGGAAGA
ACTGGCACTGCGACCTGCCGATGGTGTGCGCGCCGGACAGCGCAGTCATGTCGCGCGCGGACAGGCCCTGTCTGCTGAACATCTGGATGAGCGTGGCGAG
GCTGGACGTCGGGCCCGGGAGGTTGTTGTTGGCCAGGTTCGGGCACGACTTGGAGTAGAAGGTTGTGGACAGCTGCGCCTCCGCCGCGCCGCCGAGGACG
GCGAGAACGACGGCGGTGAGGGCAATGAGGGTGGTCGACCTGGCGAAGCCGGCCATGGCTGATAGGTGCCTGATCGGGCTAGATACTAGCAGAGGACAGT
GCAAGCTCGGTGT