Detailed information on CNT30347916


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186310Eragrostis tefSecale cereale3738.5488.29222forward
CNT30556099Eragrostis tefOryza glaberrima30.3318.6795.6182forward
CNT30454234Eragrostis tefSaccharum spontaneum27.8322.5792.81167forward
CNT30575846Eragrostis tefOryza barthii30.3320.5995.6182forward
CNT30498755Eragrostis tefDigitaria exilis30.8332.489.19185forward
CNT30116796Eragrostis tefOryza nivara30.3319.6895.6182forward
CNT30556505Eragrostis tefPanicum hallii27.8323.8992.81167forward

Expression of CNT30347916

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MHLRLIYITYGFRGASTQSIRACNNYYTPTTIQQIEYNAPCLHGWMASSEALTCRGRSWWRMPMRCWRRGR*

>peptide 2 (39 aa)
SLIYGEKTGHTPARTAIKVSRKETATETTLRARSRKTDR*

>peptide 3 (48 aa)
MGPFPVTMAWTKNPNMENMARRPFLISLTLSSAAEAGGLLQRRRGHCD*

>peptide 4 (88 aa)
MLHVSMDGWLALRLSLAGDEVGGVCPCVVGDGVVDVVEEVLDGSLPGDDGLDEESEHGEHGEAAVLDLLDLELGGGSWWSAAAPTRPL*

Sequence

>CNT30347916
CATCATTAATCTATGGTGAAAAAACAGGGCACACGCCTGCGCGTACAGCGATCAAAGTTTCCAGGAAAGAAACTGCAACAGAAACGACATTGAGAGCCCG
GTCCAGAAAAACTGATAGGTGATCAATCGTCGATCGAGTGGTACACCCATTGAATGATACATTCATCATCATGCACCTGCGCTTAATTTACATCACGTAC
GGCTTCAGAGGAGCGAGCACACAAAGCATACGCGCGTGCAACAACTACTACACGCCTACCACAATTCAGCAGATAGAGTACAATGCTCCATGTCTCCATG
GATGGATGGCTAGCTCTGAGGCTCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCATGCGTTGTTGGCGACGGGGTCGTTGACGTGGTCGAAGAGG
TTCTCGATGGGTCCCTTCCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTGACCTTGAGCT
CGGCGGCGGAAGCTGGTGGTCTGCTGCAGCGCCGACGCGGCCATTGTGACTAGTGTGTCCGGCGAAGCAGGCAGCTGAGATTGTTCTTCAGTTGAGTGAG