Detailed information on CNT30347816


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6I544|GL52_ORYSJ, E-value = 8e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690449Eragrostis tefOryza sativa7.0833.0489.26149forward
CNT30246414Eragrostis tefAvena sativa12.1125.4286.67255forward
CNT3099753Eragrostis tefOryza rufipogon9.8323.2388.89207forward
CNT30117885Eragrostis tefOryza nivara21.5751.8382.6454forward

Expression of CNT30347816

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MHGDVECKGAAESRNGTWYVVGRGTLLCDVHGRTCKTASFSLMPESVCTCMLVLGLCDNQYVHVP*

>peptide 2 (88 aa)
MARCLCYCEFFEGICALCCYVYEFVETKISEAIISRLKLSGIQDPACGYERRTSIVMAGLVTIRTKGEMELLMSVNVSLQILTKVIEN*

>peptide 3 (60 aa)
MRLREAYVDCNGRISYDQNERGNGTAHVCERILANLDESHRKLTSTRALRRRAIANRGEV*

>peptide 4 (61 aa)
MAMDCVPGSWLLKAETTAAGSSPAFFWKCTSPRGNAKTSPAATVLATSLLAVVMKPTSSLP*

>peptide 5 (43 aa)
MYETRPFIQQADAGLWHDAYATASFLKEFVHCVAMCMNLLRQK*

>peptide 6 (59 aa)
MRARETPCVFSPGTFSTLAPVTTEPAGLVMLPGLARMLVKKSSAVAFALHGNPFTFTSA*

>peptide 7 (38 aa)
MDKQDRAIILTDAWWKYGGSRSTSPDAAAQPESKQPVI*

>peptide 8 (39 aa)
MPGGSTVVVAQLRRMLLLNQRASSQLYSCRRRGEVRRGEK

Sequence

>CNT30347816
CTGCAGCTTATTACAGGAAGTAGTAGGGAGGAACACCTAACTCATTCTGCAGGTCACACTTAACCAACGATCCAGAGTAGACACGACGACATGATTGCAC
GGCACGCGCTCGCAGAATCACAAACAAACCAATAATAATCGAACCGATAAACCAATCAACGCAGATCGACCAAAACTCGAAACCGCTTAGCTCTTCTTGG
GCGCGAACTTGGCCTTGATCTTGTCCACCTCCTCGGCGCCGATCTGGAACGCCTTGGCGAGCACGTCGTCGGGCACCTCGGGCGAGGCCCCGAAGAGCGT
CATGGCGATGGACTGCGTGCCGGGGAGCTGGCTGTTGAAGGCGGAGACGACGGCGGCGGGCTCCTCGCCGGCGTTTTTCTGGAAGTGCACGAGCCCGCGC
GGGAACGCGAAGACCTCGCCGGCGGCGACCGTCTTGGCGACGAGCTTGTTGGCTGTGGTGATGAAGCCGACGTCGAGCTTGCCGTAGAGGACGAAGATGA
CCTCGGTTGCCGGCGCGTAGTCGATGCGGGCGAGGGAGACGCCCTGCGTGTTCAGCCCGGGGACCTTCTCGACGTTAGCGCCCGTGACGACGGAGCCGGC
GGGGCTCGTGATGTTGCCCGGCTTGGCGAGGATGTTGGTGAAGAAGTCGTCGGCCGTGGCGTTCGCCTTGCACGGGAACCCGTTCACCTTCACCTCTGCA
TAGTGCGACGGAGACGTGTCGTCGTTAGATAGAAGTCTGGCCGGCCGTGGTGCATTTCGCACGAGATTGGTCGATCGCATCCGTCCACTCGGATGATCGG
ACGGCACGGATGCACGGAGATGTGGAATGCAAGGGAGCAGCGGAAAGCAGAAATGGCACATGGTATGTTGTAGGCCGTGGTACTCTGCTTTGTGATGTGC
ATGGCCGCACGTGTAAAACTGCTAGTTTTAGCCTTATGCCAGAATCAGTATGCACGTGTATGCTAGTGTTAGGCTTATGCGATAATCAGTATGTTCATGT
ACCGTAGTGTGTGCCGTCTAGTTAAAAGGAAATAAAAAATAGCTGCACAACTGAAAAGTGTACTTTTAGTGACGGAGTTACAGCGCCAAAATTACCCTCT
TTTTCTCTGAAAAAATAATCTCACAGCCATGCAGACGTTAAGCTATGAGATGCAAGCAGCAGTCTGCTACTAGCACGTGTAGCAGATTATATGATCAGTA
CAGTACAGTGCAGAAGTAAAATGAACATTAGGATGTGTGTCAAAAAGAATATGCTAACCACAGTTTGAAAGCTGGGACCAAGAATTCAATCATTCTCCAA
TATCCACCCTCCCTGGCCGTACACACATCCATTGAATTGAATCTACACCGATTTTGGCACAACTAACGGATGTGGATTCTATCCTACGCCAAACATGAGG
AAAAACGCATTGCCGTAAGCGGTGGTACGCTTTCAATGCGGAACTAACTAAACCCTTTGCTCTGTCTGATGAATGTATGAAACGCGACCATTCATTCAGC
AAGCAGATGCAGGGCTATGGCACGATGCTTATGCTACTGCGAGTTTTTTGAAGGAATTTGTGCATTGTGTTGCTATGTGTATGAATTTGTTGAGACAAAA
ATAAGCGAGGCAATCATCTCGCGCCTTAAACTATCAGGGATTCAGGATCCTGCATGCGGCTACGAGAGGCGTACGTCGATTGTAATGGCAGGATTAGTTA
CGATCAGAACGAAAGGGGAAATGGAACTGCTCATGTCTGTGAACGTATCCTTGCAAATCTTGACGAAAGTCATCGAAAACTAACATCGACCCGAGCATTG
AGGCGCCGCGCCATCGCAAACAGAGGCGAAGTCTGAATCGGTCAGGAGCTTACCGGAGTTGAGGTCGGCGACGCAGAGGTCCTGGAGGTAGTCGGGGTCG
CCGGCGAGCGCCAGCGGCGCGGCGAGGACCACGGCCGCAGCGACAAGAAGCATGGACAAGCAAGACCGGGCCATCATCTTGACTGATGCCTGGTGGAAGT
ACGGTGGTAGTCGCTCAACTTCGCCGGATGCTGCTGCTCAACCAGAGAGCAAGCAGCCAGTTATATAGTTGCCGTCGCCGTGGGGAAGTGAGACGAGGAG
AAAAG