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Detailed information on CNT30347748


BLAST search results

BLAST vs Swiss-Prot:
sp|P55308|CATA2_HORVU, E-value = 3e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020926Eragrostis tefCitrullus lanatus45.4845.4880.13317forward
CNT30223857Eragrostis tefHordeum vulgare15.2142.0688.68106forward
CNT30592095Eragrostis tefMusa acuminata11.9128.1495.1883forward
CNT3037432Eragrostis tefCucumis melo25.3944.1480.79177forward

Expression of CNT30347748

Peptides detected in this lncRNA

>peptide 1 (57 aa)
GLPVELDVVGLAGGVDEGVCVDAEAVHVAVVGGHAHVVEQEEEGVQALRVGFQWNLT*

Sequence

>CNT30347748
GTGGGCTTCCAGTGGAACTTGACGTAGTGGGCCTTGCCGGCGGCGTTGACGAAGGTGTATGTGTTGACGCCGAAGCCGTCCATGTGGCGGTAGTCGGTGG
GCACGCCCACGTCGTCGAACAGGAAGAAGAAGGTGTGCAGGCTCTCCGGGTGGGCTTCCAGTGGAACTTGACGTAGTGGGCCTTGCCGGCGGCGTTGACG
AAGGTGTATGTGTTGACGCCGAAGCCGTCCATGTGGCGGTAGTCGGTGGGCACGCCCACGTCGTCGAACAGGAAGAAGAAGGTGTGCAGGCTCTCCGGGT
GGTGCGACAGAAAGTCGAAGACGCGCCAGTACTCCTGCACGTGCGACCTCGGGTTGGGCTTGAAGGCGTGGATCACGTCGGGGAACTTGATGCCGTCGCG
GATGAAGAAGACGGGGAAGTTGTTGCCCAGCAGGTCCCAGTTGCCCTCGCGCGTGTAGAACTTGACGGCGAACCCGCGCGGGTCGCGGATCGTCTCGGGG
CTCCCGCGCTCGTGGATCACCGTCGAGAAACGCACGATCACCGGCGTACGGACGCCGGGGGAACGCAAGAAGTCGGCGCACGTCAGCGCAGACACGTCGT
GGGTGCACTCGAAGAAGCCCTTGGCGGAGGCGCCGCGCGCGTGGACGACGCGCTCCGGGATGCGCTCCCGAGCAAAGTGCGCGATCTTCTCGATCAG