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Detailed information on CNT30347505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Eragrostis tefOryza sativa29.9216.4686.38257forward
CNT30520678Eragrostis tefSetaria italica29.142.4488.4250forward
CNT30554955Eragrostis tefOryza glaberrima29.6926.0286.27255forward
CNT30440289Eragrostis tefAegilops tauschii13.7423.3790.68118forward
CNT30150787Eragrostis tefBrachypodium distachyon11.0625.9691.5895forward
CNT30103362Eragrostis tefOryza rufipogon29.9222.9386.38257forward
CNT30580794Eragrostis tefEchinochloa crusgalli29.114.8889.6250forward
CNT30496207Eragrostis tefDigitaria exilis28.4110.9788.93244forward
CNT30117581Eragrostis tefOryza nivara29.9216.285.99257forward
CNT30604553Eragrostis tefOryza punctata29.817.0986.72256forward

Expression of CNT30347505

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MMMDQETKDFTNVLNRVCSSDNFCCTSSPHKHLSPPARTVQ*

>peptide 2 (66 aa)
MDTDRPESLTSDRPTTGDAGHKNAGFPSVLLHEPKPNSDLQLTDTDHTKRIVEHLHKRTGLDLTIH*

Sequence

>CNT30347505
CAGGCGTTCAGCATGAATGATGATGGATCAAGAAACCAAGGATTTCACAAACGTTCTGAACCGTGTATGTAGCTCAGACAATTTCTGCTGCACCAGTTCA
CCACATAAACATCTTTCACCACCAGCTAGAACAGTACAATGAAATGCGTAGGCAGCTCATACAAATGATTTAGAACAAGGTATAATAGCACTAACGATAG
TACGTAGTGGTTCAGATTACAAGTTCTTGACACGGCTAATTTTACAGCATAATAGCACTATAACATGACACCATACTGCTCTTACAACCCGCAGAGAAGC
AGATGCAACACCTAAGAACAAGACTAGAATAATGGACACAGACCGGCCGGAGTCACTGACCAGTGACCGACCGACCACCGGAGACGCCGGACACAAAAAC
GCCGGCTTCCCGTCGGTTCTTCTCCATGAACCGAAACCTAACAGTGATCTACAACTGACTGACACAGATCACACAAAACGAATAGTAGAACATCTACACA
AAAGAACAGGATTAGACCTAACAATCCACTAGTGCCCGCGCAGGATGCCAAAAATTCCATCTGCGCTGGTGGCGGTGGTAGTAGTAACGGCCAAGAACTG
GTGTTAATTGGTGGCGAGGAGCGAGTCCCAGTCGATCTCGTAGGATGGGTACTTGGTGAGCGCGAAGCCGGCGACCTCATCCCACGGCGCCTCGCTGAAG
TCCAGCTGCTGCATCTCCGGCACCGTCGCGGCCTCGGGGGAGGGCGACGGAGACAGGGACGAAGACAGCGAGGACTCGGCGGACTCCATGCAGGACGAGG
ACGCGTCGTCGGAGGTCGGCGAGGAGCAGTTGCTGGTGGGGGCGGAGGACGAGGTCGTG