Detailed information on CNT30347224


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673704Eragrostis tefSetaria viridis66.428.2893.37166forward
CNT30177674Eragrostis tefSecale cereale66.48.1893.37166reverse complement
CNT30286154Eragrostis tefTriticum aestivum66.415.9293.98166forward
CNT30221263Eragrostis tefHordeum vulgare41.240.0891.26103forward
CNT30384202Eragrostis tefTriticum turgidum66.410.0294.58166reverse complement
CNT30538116Eragrostis tefBrassica napus66.413.791.57166forward
CNT30460491Eragrostis tefSaccharum spontaneum46.857.9294.02117forward
CNT30203328Eragrostis tefHelianthus annuus66.420.1790.36166forward
CNT30369364Eragrostis tefOryza glumipatula33.620.1995.2484reverse complement

Expression of CNT30347224

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KEHQQRKHSAGPTLTLRLKLGEQMGLETPLVLAVNDGY*

>peptide 2 (60 aa)
RTPTAKALCWADTDTETKVRGANGIRDPTSPSRKRWILGDVRLNPCSDVANALSSFRLDV*

Sequence

>CNT30347224
AAAGAACACCAACAGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGACTAAAGTTAGGGGAGCAAATGGGATTAGAGACCCCACTAGTCCTAGCCG
TAAACGATGGATACTAGGTGATGTGCGACTCAACCCGTGCAGTGATGTAGCTAACGCGTTAAGTTCATTCCGATTAGATGTCTAGCTCTGATAACCTACT
TCACTTCCGCATATCACGAGAGTATGAGCTACGGCGGTGACACATCCTGG