Detailed information on CNT30346776


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677148Eragrostis tefSetaria viridis20.419490.43188reverse complement

Expression of CNT30346776

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MEEKRTTTLMVIMCLVILGLNVNLATAAECSCCVSARMLFCLYCCFCKNTCCFPCVLTDCVAAKIEEMEVLAKMEEGQA*

>peptide 2 (40 aa)
MNLPQMQRSLPRYFSLVFPKVQKRQLRLYPLKPIIVAIYYP

>peptide 3 (36 aa)
MSTWPPLRSVAAAYLHACCFACIAASARTLAVSHVF*

>peptide 4 (88 aa)
MTSLICVYVLSMASSILLKHDYEAGKGNHASIPSGPLSLICLYIDSVISHYHLSYEKFAMDRHEFASNAKEFTKIFFSGISKSSEASA*

>peptide 5 (29 aa)
NTQTHHTAQLPINCSWQRPFKNHISTQKQ*

>peptide 6 (34 aa)
KHTNTPHSAAAYKLQLATSIQESHLNTKTINIAR*

Sequence

>CNT30346776
GAAACACACAAACACACCACACAGCGCAGCTGCCTATAAATTGCAGCTGGCAACGTCCATTCAAGAATCACATCTCAACACAAAAACAATAAACATAGCT
AGGTAACAAAGGAAGGTAGCAACAAAAGGAGGCGGCAATGGAGGAAAAGAGGACTACCACTTTGATGGTTATTATGTGTCTGGTCATCTTGGGCCTCAAT
GTCAACTTGGCCACCGCTGCGGAGTGTAGCTGCTGCGTATCTGCACGCATGTTGTTTTGCTTGTATTGCTGCTTCTGCAAGAACACTTGCTGTTTCCCAT
GTGTTCTGACCGATTGTGTTGCTGCTAAGATTGAAGAAATGGAAGTGCTTGCTAAGATGGAAGAAGGTCAAGCCTAAAACGATATGACTACCAGCATGAA
TGCCATTCATAAGCATATGCTGCTATGCTAAGCTATGGCCAAGTTATGTTAATGTTTATCTCCAATAAGTTGTCCACCATATGGGGCAACCTCTAGTTGA
TCCATCTGTTGGTCTCAACTCTATGTATATTGTGCATTTGTGCGCATGTGTGTGGTGACAAGCATATTTACTTCCTCTTTGCTTGTAATAATGACACTGT
GAGATGTGTCATGACCAGTCTAATATGTGTTTATGTATTGTCTATGGCGTCATCAATTTTATTGAAGCATGATTATGAGGCCGGGAAAGGCAACCACGCC
TCAATCCCTTCCGGGCCCCTTAGTCTAATATGTTTATATATTGATAGCGTGATATCCCATTACCACCTTTCGTACGAGAAATTTGCAATGGATCGACATG
AATTTGCCTCAAATGCAAAGGAGTTTACCAAGATATTTTTCTCTGGTATTTCCAAAAGTTCAGAAGCGTCAGCTTAGACTCTATCCACTGAAGCCGATCA
TTGTTGCCATTTACTACCCAC